RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA764222", tax_clade = "PVC group" and tax_phylum = "Planctomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Planctomycetota · 3 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJNA764222 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29421408 29421408 PRJNA764222_S_NODE_13949_length_239_cov_1.635417_g13791_i0 PRJNA764222 13949 239 1.635417 3.90864663 Planctomycetota bacterium 2026780 Bacteria Bacteria 42.7 0.0339   NR MFH1616428.1 2026780 g13791 i0 32.7 0.690376569037657 55 37 69 0 215 51 143 197 MFH1616428.1 uroporphyrinogen decarboxylase family protein [Planctomycetota bacterium] diamond 165 42.7 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium
29651844 29651844 PRJNA764222_S_NODE_9290_length_268_cov_1.859729_g9132_i0 PRJNA764222 9290 268 1.859729 4.98407372 Pseudomonadati 3379134 Bacteria Bacteria 43.5 0.0262   NR HKA06075.1 2052164 g9132 i0 50 0.805970149253731 42 18 43.7 1 14 130 214 255 HKA06075.1 aspartate aminotransferase family protein [Gemmataceae bacterium] diamond 216 43.5 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae   Gemmataceae bacterium
30916095 30916095 PRJNA764222_S_NODE_31954_length_163_cov_4.387931_g31796_i0 PRJNA764222 31954 163 4.387931 7.15232753 Pseudomonadati 3379134 Bacteria Bacteria 75.9 1.3e-15   NR MCD8349226.1 2026779 g31796 i0 80 5.79754601226994 45 9 82.8 0 27 161 1 45 MCD8349226.1 nitronate monooxygenase [Planctomycetaceae bacterium] diamond 945 76.3 0.99475753604194 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae   Planctomycetaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;