RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA764222", tax_clade = "Opisthokonta" and tax_phylum = "Nematoda"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 4 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 4 ✖

bioproject 1

  • PRJNA764222 · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7123340 7123340 PRJNA764222_S_NODE_16066_length_228_cov_1.679558_g15908_i0 PRJNA764222 16066 228 1.679558 3.82939224 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.02   NTclustered gi|1557394408|emb|LR031564.1| 45931 g15908 i0 100 0.12280701754386 28 0 12 0 201 228 50 23 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
8397821 8397821 PRJNA764222_S_NODE_16767_length_224_cov_2.576271_g16609_i0 PRJNA764222 16767 224 2.576271 5.77084704 Monhystrium mangrovi 2838918 Nematoda Nematoda 80.5 9.13e-11   NTclustered gi|2044092678|gb|MZ274177.1| 2838918 g16609 i0 82.796 0.830357142857143 93 12 41 4 134 224 634 724 Monhystrium mangrovi voucher T71_1 large subunit ribosomal RNA gene, partial sequence blastn 186 80.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Monhysterida Monhysteridae Monhystrium Monhystrium mangrovi
19057490 19057490 PRJNA764222_S_NODE_15855_length_229_cov_1.576923_g15697_i0 PRJNA764222 15855 229 1.576923 3.61115367 Hirschmanniella 46009 Nematoda Nematoda 130 9.17e-26   NTclustered gi|408723862|gb|JX291141.1| 362338 g15697 i0 91.489 41.7729257641921 94 8 41 0 18 111 694 601 Hirschmanniella oryzae clone 2 28S ribosomal RNA gene, partial sequence blastn 9566 130 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Hirschmanniella Hirschmanniella oryzae
28673507 28673507 PRJNA764222_S_NODE_30067_length_169_cov_1.950820_g29909_i0 PRJNA764222 30067 169 1.95082 3.2968858 Metazoa 33208 Nematoda Nematoda 41.2 0.0112   NR ETN69019.1 51031 g29909 i0 42.9 1.42011834319527 35 19 60.4 1 151 50 52 86 ETN69019.1 hypothetical protein NECAME_01129 [Necator americanus] diamond 240 41.6 0.990384615384615 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Ancylostomatidae Necator Necator americanus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;