RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA764222", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 2 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 2 ✖

bioproject 1

  • PRJNA764222 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
31158694 31158694 PRJNA764222_S_NODE_15195_length_232_cov_2.432432_g15037_i0 PRJNA764222 15195 232 2.432432 5.64324224 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 42.7 0.013   NR HXI34197.1 2448054 g15037 i0 38.1 0.543103448275862 42 26 54.3 0 134 9 40 81 HXI34197.1 ABC transporter permease [Gemmatimonadales bacterium] diamond 126 42.7 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
32361347 32361347 PRJNA764222_S_NODE_21979_length_200_cov_3.751634_g21821_i0 PRJNA764222 21979 200 3.751634 7.503268 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 89 1.1e-18   NR UCE20474.1 2026742 g21821 i0 60.6 5.925 66 26 99 0 1 198 185 250 UCE20474.1 MAG: selenocysteine-specific translation elongation factor [Gemmatimonadota bacterium] diamond 1185 89 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;