RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA763718" and tax_phylum = "Ciliophora"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA763718 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2480859 2480859 PRJNA763718_S_NODE_4702_length_202_cov_3.787879_g4494_i0 PRJNA763718 4702 202 3.787879 7.65151558 Condylostoma 40632 SAR_Eukaryotes SAR_Eukaryotes 119 1.71e-22   NTclustered gi|1216628401|gb|KX099195.1| 396044 g4494 i0 86.486 46.8465346534653 111 12 54 3 49 158 112 4 Condylostoma spatiosum clone CS2 internal transcribed spacer 1 and 5.8S ribosomal RNA gene, partial sequence blastn 9463 119 1 Eukaryota Sar   Ciliophora Heterotrichea Heterotrichida Condylostomatidae Condylostoma Condylostoma spatiosum
15233900 15233900 PRJNA763718_S_NODE_2892_length_265_cov_1.412281_g2684_i0 PRJNA763718 2892 265 1.412281 3.74254465 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 279 1.02e-70   NTclustered gi|92790159|emb|AJ965265.1| 5987 g2684 i0 86.26 236.803773584906 262 30 98 6 7 265 494 236 Isotricha prostoma partial mRNA for Polyubiqutin 3 (polyubiqutin 3 gene) blastn 62753 279 1 Eukaryota Sar   Ciliophora Litostomatea Vestibuliferida Isotrichidae Isotricha Isotricha prostoma
21607586 21607586 PRJNA763718_S_NODE_5417_length_188_cov_1.721854_g5209_i0 PRJNA763718 5417 188 1.721854 3.23708552 root 1 Root_unresolved Root_unresolved 71.3 4.45e-8   NTclustered gi|159993|gb|M34540.1|PARCAM 5888 g5209 i0 88.136 2.20744680851064 59 7 31 0 130 188 563 505 P.tetraurelia calmodulin gene, complete cds blastn 415 71.3 1 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Parameciidae Paramecium Paramecium tetraurelia

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;