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contig_metadata

13 rows where bioproject = "PRJNA763718" and tax_phylum = "Chordata"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chordata · 13 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA763718 · 13 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2020230 2020230 PRJNA763718_S_NODE_8042_length_156_cov_0.941176_g7834_i0 PRJNA763718 8042 156 0.941176 1.46823456 Ovis aries 9940 Chordata Chordata 272 9.059999999999999e-69   NTclustered gi|2606963008|ref|XR_009599067.1| 9940 g7834 i0 98.077 43.1538461538462 156 3 100 0 1 156 188 343 PREDICTED: Ovis aries uncharacterized LOC132659100 (LOC132659100), ncRNA blastn 6732 272 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Ovis Ovis aries
2480871 2480871 PRJNA763718_S_NODE_7902_length_157_cov_0.966667_g7694_i0 PRJNA763718 7902 157 0.966667 1.51766719 Bos 9903 Chordata Chordata 291 2.52e-74   NTclustered gi|381342543|gb|JQ437479.1| 9909 g7694 i0 100 100 157 0 100 0 1 157 7293 7137 Bos primigenius mitochondrion, complete genome blastn 15700 291 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Bos Bos primigenius
5033684 5033684 PRJNA763718_S_NODE_5064_length_195_cov_1.455696_g4856_i0 PRJNA763718 5064 195 1.455696 2.8386072 Metazoa 33208 Chordata Chordata 361 2.46e-95   NTclustered gi|2158466365|gb|MZ901501.1| 9913 g4856 i0 100 100 195 0 100 0 1 195 2734 2540 Bos taurus isolate CCHF_155 haplogroup T3 mitochondrion, complete genome blastn 19500 361 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Bos Bos taurus
5847743 5847743 PRJNA763718_S_NODE_6545_length_171_cov_1.432836_g6337_i0 PRJNA763718 6545 171 1.432836 2.45014956 Opisthokonta 33154 Chordata Chordata 101 1.1199999999999999e-23   NR XP_067890277.1 7792 g6337 i0 76.9 52.7719298245614 52 12 91.2 0 170 15 84 135 XP_067890277.1 probable cysteine--tRNA ligase, mitochondrial isoform X4 [Heterodontus francisci] diamond 9024 101 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Heterodontiformes Heterodontidae Heterodontus Heterodontus francisci
6309451 6309451 PRJNA763718_S_NODE_4025_length_219_cov_3.362637_g3817_i0 PRJNA763718 4025 219 3.362637 7.36417503 Bos 9903 Chordata Chordata 405 1.29e-108   NTclustered gi|2158466365|gb|MZ901501.1| 9913 g3817 i0 100 100 219 0 100 0 1 219 1277 1059 Bos taurus isolate CCHF_155 haplogroup T3 mitochondrion, complete genome blastn 21900 405 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Bos Bos taurus
7122920 7122920 PRJNA763718_S_NODE_5926_length_179_cov_3.781690_g5718_i0 PRJNA763718 5926 179 3.78169 6.7692251 Pyrrhula murina 928672 Chordata Chordata 58.4 3.26e-4   NTclustered gi|2920008274|emb|OZ239007.1| 928672 g5718 i0 97.059 0.513966480446927 34 1 19 0 146 179 7535564 7535531 Pyrrhula murina genome assembly, chromosome: 12 blastn 92 58.4 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Fringillidae Pyrrhula Pyrrhula murina
8858500 8858500 PRJNA763718_S_NODE_1967_length_335_cov_56.778523_g1759_i0 PRJNA763718 1967 335 56.778523 190.20805205 Cheloniidae 8465 Chordata Chordata 52.8 0.032   NTclustered gi|2911500576|emb|OZ223607.1| 8472 g1759 i0 100 0.250746268656716 28 0 8 0 304 331 10181252 10181279 Lepidochelys kempii isolate rLepKem1 genome assembly, chromosome: 21 blastn 84 52.8 1 Eukaryota Opisthokonta Metazoa Chordata   Testudines Cheloniidae Lepidochelys Lepidochelys kempii
10134016 10134016 PRJNA763718_S_NODE_4468_length_207_cov_10.123529_g4260_i0 PRJNA763718 4468 207 10.123529 20.95570503 Metazoa 33208 Chordata Chordata 152 1.7399999999999998e-32   NTclustered gi|1981790840|ref|XM_039406968.1| 7725 g4260 i0 90.435 60.5797101449275 115 11 56 0 93 207 1300 1186 PREDICTED: Styela clava actin, muscle-type (LOC120338943), mRNA blastn 12540 152 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Stolidobranchia Styelidae Styela Styela clava
12685087 12685087 PRJNA763718_S_NODE_4810_length_200_cov_1.245399_g4602_i0 PRJNA763718 4810 200 1.245399 2.490798 root 1 Root_unresolved Root_unresolved 359 9.14e-95   NTclustered gi|117582301|gb|EF057751.1| 9940 g4602 i0 99 110.765 200 2 100 0 1 200 1 200 Ovis ares 1.714 satellite sequence blastn 22153 359 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Ovis Ovis aries
12685096 12685096 PRJNA763718_S_NODE_6230_length_175_cov_1.557971_g6022_i0 PRJNA763718 6230 175 1.557971 2.72644925 Chordata 7711 Chordata Chordata 52.8 0.015   NTclustered gi|354783148|gb|JN947649.1| 10090 g6022 i0 100 2.24 28 0 16 0 148 175 36922 36895 Mus musculus targeted non-conditional, lacZ-tagged mutant allele Tex261:tm1e(EUCOMM)Hmgu tm1e(EUCOMM)Wtsi; transgenic blastn 392 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
21607595 21607595 PRJNA763718_S_NODE_7457_length_161_cov_1.975806_g7249_i0 PRJNA763718 7457 161 1.975806 3.18104766 Bos 9903 Chordata Chordata 298 1.56e-76   NTclustered gi|1398977718|gb|MF169213.1| 9909 g7249 i0 100 100 161 0 100 0 1 161 2164 2004 Bos primigenius isolate Horn_CMLIX mitochondrion, partial genome blastn 16100 298 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Bos Bos primigenius
26958077 26958077 PRJNA763718_S_NODE_7002_length_165_cov_5.281250_g6794_i0 PRJNA763718 7002 165 5.28125 8.7140625 Staurois parvus 386267 Chordata Chordata 56.2 1.95e-8   NR CAI9547784.1 386267 g6794 i0 65 1.45454545454545 40 14 72.7 0 120 1 52 91 CAI9547784.1 unnamed protein product, partial [Staurois parvus] diamond 240 56.2 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Staurois Staurois parvus
28547379 28547379 PRJNA763718_S_NODE_8007_length_156_cov_1.605042_g7799_i0 PRJNA763718 8007 156 1.605042 2.50386552 Polypteridae 8289 Chordata Chordata 78.6 1.51e-15   NR XP_051791274.1 27687 g7799 i0 80.4 9.80769230769231 51 9 96.2 1 2 151 127 177 XP_051791274.1 E3 SUMO-protein ligase ZBED1-like [Erpetoichthys calabaricus] diamond 1530 78.6 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Erpetoichthys Erpetoichthys calabaricus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;