RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA763718", tax_kingdom = "Metazoa" and tax_phylum = "Platyhelminthes"

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tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 3 ✖

tax_kingdom 1

  • Metazoa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA763718 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8858508 8858508 PRJNA763718_S_NODE_3067_length_256_cov_2.561644_g2859_i0 PRJNA763718 3067 256 2.561644 6.55780864 Opisthokonta 33154 Platyhelminthes Platyhelminthes 215 2.8e-51   NTclustered gi|393794039|dbj|AK388636.1| 6161 g2859 i0 84 70.7578125 225 35 88 1 32 256 28 251 Dugesia japonica cDNA, clone: Dj_aH_000_00546HH.full, full-insert sequence, expressed in adult head blastn 18114 215 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Rhabditophora Tricladida Dugesiidae Dugesia Dugesia japonica
10948330 10948330 PRJNA763718_S_NODE_7989_length_156_cov_1.840336_g7781_i0 PRJNA763718 7989 156 1.840336 2.87092416 Schistosoma mansoni 6183 Platyhelminthes Platyhelminthes 189 9.39e-44   NTclustered gi|1116517974|gb|AY485340.2| 6183 g7781 i0 88.462 302.448717948718 156 18 100 0 1 156 174 19 Schistosoma mansoni ubiquitin mRNA, partial cds blastn 47182 189 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma mansoni
19870984 19870984 PRJNA763718_S_NODE_1896_length_343_cov_3.241830_g1688_i0 PRJNA763718 1896 343 3.24183 11.1194769 Bresslauilla relicta 1311963 Platyhelminthes Platyhelminthes 86.1 3.2e-12   NTclustered gi|588313927|gb|KC869885.1| 1311963 g1688 i0 81.081 0.489795918367347 111 17 32 2 219 329 1712 1606 Bresslauilla relicta 28S ribosomal RNA genes, partial sequence blastn 168 86.1 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Rhabditophora Rhabdocoela Graffillidae Bresslauilla Bresslauilla relicta

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;