RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA763718" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 3 ✖

bioproject 1

  • PRJNA763718 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3757168 3757168 PRJNA763718_S_NODE_6463_length_172_cov_1.444444_g6255_i0 PRJNA763718 6463 172 1.444444 2.48444368 Eukaryota 2759 Plants Plants 98.6 3.12e-22   NR RMZ52643.1 3075 g6255 i0 90.9 133.447674418605 55 5 95.9 0 166 2 91 145 RMZ52643.1 hypothetical protein APUTEX25_000762, partial [Auxenochlorella protothecoides] diamond 22953 99.4 0.991951710261569 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides
21146738 21146738 PRJNA763718_S_NODE_7677_length_159_cov_1.122951_g7469_i0 PRJNA763718 7677 159 1.122951 1.78549209 Eukaryota 2759 Plants Plants 97.1 7.21e-22   NR CAD7695386.1 121088 g7469 i0 86.5 6.86792452830189 52 7 98.1 0 3 158 402 453 CAD7695386.1 unnamed protein product [Ostreobium quekettii] diamond 1092 97.8 0.992842535787321 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Bryopsidales Ostreobiaceae Ostreobium Ostreobium quekettii
27432674 27432674 PRJNA763718_S_NODE_6363_length_173_cov_1.992647_g6155_i0 PRJNA763718 6363 173 1.992647 3.44727931 Sanguina aurantia 2578422 Plants Plants 77 4.63e-16   NR MEW5306832.1 2578422 g6155 i0 59.6 6.91907514450867 57 23 98.8 0 172 2 59 115 MEW5306832.1 hypothetical protein [Sanguina aurantia] diamond 1197 77 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Sanguina Sanguina aurantia

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;