RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA763718" and tax_clade = "PVC group"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 2

tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJNA763718 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27884059 27884059 PRJNA763718_S_NODE_8365_length_153_cov_1.982759_g8157_i0 PRJNA763718 8365 153 1.982759 3.03362127 root 1 Root_unresolved Root_unresolved 43.1 6.9e-4   NR MBS4163024.1 362787 g8157 i0 74.1 3.35294117647059 27 7 52.9 0 2 82 19 45 MBS4163024.1 hypothetical protein [Candidatus Protochlamydia amoebophila] diamond 513 43.1 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia amoebophila
30338024 30338024 PRJNA763718_S_NODE_6672_length_169_cov_6.090909_g6464_i0 PRJNA763718 6672 169 6.090909 10.29363621 Planctomycetota bacterium 2026780 Bacteria Bacteria 42.7 0.0132   NR MBM4009064.1 2026780 g6464 i0 38.5 1.38461538461538 39 21 63.9 1 12 119 137 175 MBM4009064.1 DMT family transporter [Planctomycetota bacterium] diamond 234 42.7 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium
30653336 30653336 PRJNA763718_S_NODE_4153_length_215_cov_12.634831_g3945_i0 PRJNA763718 4153 215 12.634831 27.16488665 Gemmatales bacterium 2838789 Bacteria Bacteria 42 0.0454   NR MCS7017116.1 2838789 g3945 i0 41.4 0.809302325581395 58 25 80.9 3 184 11 162 210 MCS7017116.1 ABC transporter permease [Gemmatales bacterium] diamond 174 42 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales     Gemmatales bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;