RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA763718", tax_clade = "Opisthokonta" and tax_phylum = "Nematoda"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 4 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 4 ✖

bioproject 1

  • PRJNA763718 · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9672655 9672655 PRJNA763718_S_NODE_8788_length_150_cov_1.035398_g8580_i0 PRJNA763718 8788 150 1.035398 1.553097 Marimermis maritima 2855633 Nematoda Nematoda 156 9.049999999999999e-34   NTclustered gi|2063683630|gb|MZ504144.1| 2855633 g8580 i0 85.43 78.2866666666667 151 20 100 2 1 150 5319 5170 Marimermis maritima isolate Matua small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 11743 156 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Marimermithida Marimermithidae Marimermis Marimermis maritima
17322520 17322520 PRJNA763718_S_NODE_8654_length_151_cov_1.342105_g8446_i0 PRJNA763718 8654 151 1.342105 2.02657855 Strongyloides papillosus 174720 Nematoda Nematoda 99 1.56e-16   NTclustered gi|687022666|emb|LM525580.1| 174720 g8446 i0 80.147 2.28476821192053 136 23 89 4 16 149 237138 237271 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0000007 blastn 345 99 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
28136823 28136823 PRJNA763718_S_NODE_5005_length_196_cov_2.100629_g4797_i0 PRJNA763718 5005 196 2.100629 4.11723284 Trichinella 6333 Nematoda Nematoda 40.4 0.0367   NR KRY99076.1 6337 g4797 i0 43.2 2.69387755102041 44 24 65.8 1 14 142 25 68 KRY99076.1 hypothetical protein T4B_10655 [Trichinella pseudospiralis] diamond 528 40.4 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella pseudospiralis
32266418 32266418 PRJNA763718_S_NODE_5418_length_188_cov_1.708609_g5210_i0 PRJNA763718 5418 188 1.708609 3.21218492 Dirofilaria immitis 6287 Nematoda Nematoda 48.5 9.53e-5   NR MCP9259222.1 6287 g5210 i0 59 1.24468085106383 39 16 62.2 0 121 5 100 138 MCP9259222.1 putative serine acetyltransferase [Dirofilaria immitis] diamond 234 48.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Dirofilaria Dirofilaria immitis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;