RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA763718", tax_clade = "Amoebozoa" and tax_phylum = "Discosea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Discosea · 3 ✖

tax_clade 1

  • Amoebozoa · 3 ✖

bioproject 1

  • PRJNA763718 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2020234 2020234 PRJNA763718_S_NODE_882_length_579_cov_8.199262_g693_i0 PRJNA763718 882 579 8.199262 47.47372698 Vannella ebro 207334 Discosea other_Eukaryota 411 8.19e-110   NTclustered gi|33946344|gb|AY294151.1| 207334 g693 i0 79.693 93.8877374784111 586 105 100 14 1 579 451 1029 Vannella ebro actin mRNA, complete cds blastn 54361 411 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella ebro
4572540 4572540 PRJNA763718_S_NODE_844_length_596_cov_10.468694_g659_i0 PRJNA763718 844 596 10.468694 62.39341624 Stenamoeba dejonckheerei 2730938 Discosea other_Eukaryota 167 2.02e-36   NTclustered gi|1835259542|gb|MT386405.1| 2730938 g659 i0 80.252 19.6040268456376 238 34 40 9 361 596 1679 1905 Stenamoeba dejonckheerei strain 32 small subunit ribosomal RNA gene, partial sequence blastn 11684 167 1 Eukaryota Amoebozoa   Discosea   Longamoebia Thecamoebida Stenamoeba Stenamoeba dejonckheerei
29295288 29295288 PRJNA763718_S_NODE_8029_length_156_cov_0.983193_g7821_i0 PRJNA763718 8029 156 0.983193 1.53378108 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 80.9 1.14e-17   NR XP_004352947.1 1257118 g7821 i0 72.5 3.94230769230769 51 14 98.1 0 4 156 59 109 XP_004352947.1 ras-related C3 botulinum toxin substrate 3 (rho family, small GTP binding protein Rac3), putative [Acanthamoeba castellanii str. Neff] diamond 615 80.9 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;