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contig_metadata

13 rows where bioproject = "PRJNA763243", tax_phylum = "Pisuviricota" and tax_superkingdom = "Viruses"

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tax_superkingdom 1

  • Viruses · 13 ✖

tax_phylum 1

  • Pisuviricota · 13 ✖

tax_kingdom 1

bioproject 1

  • PRJNA763243 · 13 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
743065 743065 PRJNA763243_P_NODE_30721_length_306_cov_8.618026_g30375_i0 PRJNA763243 30721 306 8.618026 26.37115956 Betacoronavirus pandemicum 3418604 Viruses Viruses 545 1.07e-150   NTclustered gi|2522444418|emb|OX894531.1| 2697049 g30375 i0 98.706 101.058823529412 309 1 100 1 1 306 29383 29691 Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite blastn 30924 545 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
4571849 4571849 PRJNA763243_P_NODE_48684_length_257_cov_1.500000_g48338_i0 PRJNA763243 48684 257 1.5 3.855 Betacoronavirus pandemicum 3418604 Viruses Viruses 475 1.1699999999999999e-129   NTclustered gi|2028980905|gb|MZ002360.1| 2697049 g48338 i0 100 100 257 0 100 0 1 257 27366 27622 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/WI-CDC-LC0038184/2021, complete genome blastn 25700 475 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
4572250 4572250 PRJNA763243_P_NODE_66984_length_231_cov_13.373418_g66638_i0 PRJNA763243 66984 231 13.373418 30.89259558 Betacoronavirus pandemicum 3418604 Viruses Viruses 427 2.9399999999999998e-115   NTclustered gi|2499447400|emb|OX492971.1| 2697049 g66638 i0 100 100 231 0 100 0 1 231 28769 28539 Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite blastn 23100 427 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
4572314 4572314 PRJNA763243_P_NODE_69964_length_220_cov_16.938776_g69618_i0 PRJNA763243 69964 220 16.938776 37.2653072 Betacoronavirus pandemicum 3418604 Viruses Viruses 407 3.61e-109   NTclustered gi|2499447400|emb|OX492971.1| 2697049 g69618 i0 100 100 220 0 100 0 1 220 5978 5759 Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite blastn 22000 407 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
5847041 5847041 PRJNA763243_P_NODE_48425_length_257_cov_7.483696_g48079_i0 PRJNA763243 48425 257 7.483696 19.23309872 Betacoronavirus pandemicum 3418604 Viruses Viruses 475 1.1699999999999999e-129   NTclustered gi|2499447400|emb|OX492971.1| 2697049 g48079 i0 100 100 257 0 100 0 1 257 19660 19404 Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite blastn 25700 475 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
7121896 7121896 PRJNA763243_P_NODE_34026_length_293_cov_6.322727_g33680_i0 PRJNA763243 34026 293 6.322727 18.52559011 Betacoronavirus pandemicum 3418604 Viruses Viruses 542 1.32e-149   NTclustered gi|2080688819|emb|OU532432.1| 2697049 g33680 i0 100 100 293 0 100 0 1 293 2687 2395 Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1 blastn 29300 542 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
8396271 8396271 PRJNA763243_P_NODE_29007_length_310_cov_4.708861_g28661_i0 PRJNA763243 29007 310 4.708861 14.5974691 Betacoronavirus pandemicum 3418604 Viruses Viruses 278 4.39e-70   NTclustered gi|2499447400|emb|OX492971.1| 2697049 g28661 i0 100 96.7741935483871 150 0 97 0 161 310 17957 18106 Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite blastn 30000 278 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
10947096 10947096 PRJNA763243_P_NODE_2769_length_805_cov_10.346995_g2504_i0 PRJNA763243 2769 805 10.346995 83.29330975 Betacoronavirus pandemicum 3418604 Viruses Viruses 110 4.73e-19   NTclustered gi|2155043488|emb|OV016109.1| 2697049 g2504 i0 95.652 7.71925465838509 69 1 8 2 1 67 30059 29991 Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1 blastn 6214 110 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
14772501 14772501 PRJNA763243_P_NODE_52672_length_250_cov_1.717514_g52326_i0 PRJNA763243 52672 250 1.717514 4.293785 Sobemovirus sp. 2809869 Viruses Viruses 187 5.949999999999998e-43   NTclustered gi|2171145024|gb|MZ218240.1| 2809869 g52326 i0 81.356 1.588 236 38 93 5 6 238 5149 5381 MAG: Sobemovirus sp. isolate 267-k141_60134 genomic sequence blastn 397 187 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Sobelivirales Solemoviridae Sobemovirus Sobemovirus sp.
16045687 16045687 PRJNA763243_P_NODE_29093_length_310_cov_4.417722_g28747_i0 PRJNA763243 29093 310 4.417722 13.6949382 Betacoronavirus pandemicum 3418604 Viruses Viruses 278 4.39e-70   NTclustered gi|2499447400|emb|OX492971.1| 2697049 g28747 i0 100 96.4451612903226 150 0 96 0 161 310 19289 19438 Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite blastn 29898 278 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
21146476 21146476 PRJNA763243_P_NODE_67697_length_229_cov_5.102564_g67351_i0 PRJNA763243 67697 229 5.102564 11.68487156 Betacoronavirus pandemicum 3418604 Viruses Viruses 272 1.4399999999999999e-68   NTclustered gi|2499447400|emb|OX492971.1| 2697049 g67351 i0 100 64.1921397379913 147 0 64 0 1 147 29356 29210 Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite blastn 14700 272 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
22421315 22421315 PRJNA763243_P_NODE_71858_length_211_cov_14.217391_g71512_i0 PRJNA763243 71858 211 14.217391 29.99869501 Shenzhen dicistro-like virus 2789378 Viruses Viruses 374 3.4799999999999995e-99   NTclustered gi|1935607040|gb|MT747995.1| 2789378 g71512 i0 98.585 1.99526066350711 212 2 100 1 1 211 3078 2867 Shenzhen dicistro-like virus strain USAdp-3 polyprotein gene, complete cds blastn 421 374 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Dicistroviridae   Shenzhen dicistro-like virus
24970467 24970467 PRJNA763243_P_NODE_64280_length_240_cov_5.443114_g63934_i0 PRJNA763243 64280 240 5.443114 13.0634736 Betacoronavirus pandemicum 3418604 Viruses Viruses 444 3.05e-120   NTclustered gi|2028980905|gb|MZ002360.1| 2697049 g63934 i0 100 100 240 0 100 0 1 240 22927 22688 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/WI-CDC-LC0038184/2021, complete genome blastn 24000 444 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;