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contig_metadata

22 rows where bioproject = "PRJNA763243", tax_phylum = "Kitrinoviricota" and tax_superkingdom = "Viruses"

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analysis 2

tax_superkingdom 1

  • Viruses · 22 ✖

tax_phylum 1

  • Kitrinoviricota · 22 ✖

tax_kingdom 1

bioproject 1

  • PRJNA763243 · 22 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2019426 2019426 PRJNA763243_P_NODE_43022_length_269_cov_14.913265_g42676_i0 PRJNA763243 43022 269 14.913265 40.11668285 Tobamovirus tropici 3432893 Viruses Viruses 481 2.65e-131   NTclustered gi|1893169051|gb|MT130385.1| 327387 g42676 i0 99.248 10.8773234200743 266 2 99 0 4 269 1734 1999 Tropical soda apple mosaic virus isolate I4-11-TSAMV 183 kDa replicase, movement protein, and coat protein genes, complete cds blastn 2926 481 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus tropici
2020006 2020006 PRJNA763243_P_NODE_69002_length_225_cov_12.138158_g68656_i0 PRJNA763243 69002 225 12.138158 27.3108555 Tobamovirus capsici 3432865 Viruses Viruses 403 4.799999999999998e-108   NTclustered gi|1893169063|gb|MT130388.1| 12239 g68656 i0 99.107 93.7511111111111 224 2 99 0 1 224 5133 4910 Pepper mild mottle virus isolate M2-PMMoV 180k replication protein gene, partial cds; and movement protein and coat protein genes, complete cds blastn 21094 403 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus capsici
2020061 2020061 PRJNA763243_P_NODE_71262_length_214_cov_8.390071_g70916_i0 PRJNA763243 71262 214 8.390071 17.95475194 Tobamovirus tropici 3432893 Viruses Viruses 379 7.609999999999999e-101   NTclustered gi|1893169035|gb|MT130381.1| 327387 g70916 i0 99.057 43.7523364485981 212 1 99 1 1 211 6214 6003 Tropical soda apple mosaic virus isolate I2-5.5-TSAMV 183 kDa replicase, movement protein, and coat protein genes, complete cds blastn 9363 379 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus tropici
3294107 3294107 PRJNA763243_P_NODE_20283_length_351_cov_11.690647_g19937_i0 PRJNA763243 20283 351 11.690647 41.03417097 Tobamovirus capsici 3432865 Viruses Viruses 632 9.309999999999999e-177   NTclustered gi|1935641333|gb|MT665963.1| 12239 g19937 i0 99.425 99.0968660968661 348 2 99 0 4 351 194 541 Pepper mild mottle virus isolate I-T movement protein gene, partial cds; and coat protein gene, complete cds blastn 34783 632 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus capsici
4572504 4572504 PRJNA763243_P_NODE_9764_length_478_cov_16.511111_g9421_i0 PRJNA763243 9764 478 16.511111 78.92311058 Tobamovirus capsici 3432865 Viruses Viruses 841 0   NTclustered gi|1893169063|gb|MT130388.1| 12239 g9421 i0 98.529 97.6652719665272 476 7 99 0 1 476 4310 3835 Pepper mild mottle virus isolate M2-PMMoV 180k replication protein gene, partial cds; and movement protein and coat protein genes, complete cds blastn 46684 841 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus capsici
5846341 5846341 PRJNA763243_P_NODE_1905_length_937_cov_25.031250_g1682_i0 PRJNA763243 1905 937 25.03125 234.5428125 Skokie tombus-like virus 2789423 Viruses Viruses 1585 0   NTclustered gi|1933757594|gb|MW177751.1| 2789423 g1682 i0 99.204 0.938100320170758 879 7 94 0 59 937 1270 392 Skokie tombus-like virus strain USAdp coat protein gene, partial cds blastn 879 1585 1 Viruses   Orthornavirae Kitrinoviricota Tolucaviricetes Tolivirales Tombusviridae   Skokie tombus-like virus
5846612 5846612 PRJNA763243_P_NODE_30165_length_308_cov_39.680851_g29819_i0 PRJNA763243 30165 308 39.680851 122.21702108 Skokie tombus-like virus 2789423 Viruses Viruses 564 2.99e-156   NTclustered gi|1933757594|gb|MW177751.1| 2789423 g29819 i0 99.675 1 308 1 100 0 1 308 155 462 Skokie tombus-like virus strain USAdp coat protein gene, partial cds blastn 308 564 1 Viruses   Orthornavirae Kitrinoviricota Tolucaviricetes Tolivirales Tombusviridae   Skokie tombus-like virus
7122816 7122816 PRJNA763243_P_NODE_74106_length_201_cov_25.492188_g73760_i0 PRJNA763243 74106 201 25.492188 51.23929788 Tobamovirus tropici 3432893 Viruses Viruses 350 5.539999999999999e-92   NTclustered gi|1893169035|gb|MT130381.1| 327387 g73760 i0 99.482 11.5273631840796 193 0 96 1 7 198 3824 3632 Tropical soda apple mosaic virus isolate I2-5.5-TSAMV 183 kDa replicase, movement protein, and coat protein genes, complete cds blastn 2317 350 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus tropici
8858455 8858455 PRJNA763243_P_NODE_70587_length_217_cov_15.555556_g70241_i0 PRJNA763243 70587 217 15.555556 33.75555652 Tobamovirus 12234 Viruses Viruses 381 2.1499999999999995e-101   NTclustered gi|139866184|dbj|AB276030.1| 12239 g70241 i0 99.522 95.2995391705069 209 1 96 0 6 214 356 148 Pepper mild mottle virus genomic RNA, complete genome, strain: L4BV blastn 20680 381 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus capsici
9671228 9671228 PRJNA763243_P_NODE_20008_length_353_cov_5.278571_g19662_i0 PRJNA763243 20008 353 5.278571 18.63335563 Tobamovirus capsici 3432865 Viruses Viruses 351 2.94e-92   NTclustered gi|1893169063|gb|MT130388.1| 12239 g19662 i0 99.482 91.2606232294618 193 1 96 0 1 193 3461 3269 Pepper mild mottle virus isolate M2-PMMoV 180k replication protein gene, partial cds; and movement protein and coat protein genes, complete cds blastn 32215 351 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus capsici
10946822 10946822 PRJNA763243_P_NODE_16949_length_378_cov_7.485246_g16604_i0 PRJNA763243 16949 378 7.485246 28.29422988 Skokie tombus-like virus 2789423 Viruses Viruses 693 0   NTclustered gi|1935607036|gb|MT747993.1| 2789423 g16604 i0 99.735 1.99206349206349 378 1 100 0 1 378 824 1201 Skokie tombus-like virus strain USAdp-1 RNA-dependent RNA polymerase gene, complete cds blastn 753 693 1 Viruses   Orthornavirae Kitrinoviricota Tolucaviricetes Tolivirales Tombusviridae   Skokie tombus-like virus
12222793 12222793 PRJNA763243_P_NODE_34010_length_293_cov_7.722727_g33664_i0 PRJNA763243 34010 293 7.722727 22.62759011 Tobamovirus capsici 3432865 Viruses Viruses 520 6.2e-143   NTclustered gi|1893169063|gb|MT130388.1| 12239 g33664 i0 98.966 94.9965870307167 290 3 99 0 1 290 5509 5220 Pepper mild mottle virus isolate M2-PMMoV 180k replication protein gene, partial cds; and movement protein and coat protein genes, complete cds blastn 27834 520 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus capsici
14771572 14771572 PRJNA763243_P_NODE_14192_length_407_cov_21.550898_g13847_i0 PRJNA763243 14192 407 21.550898 87.71215486 Tobamovirus capsici 3432865 Viruses Viruses 725 0   NTclustered gi|1893169063|gb|MT130388.1| 12239 g13847 i0 99.01 99.2874692874693 404 4 99 0 1 404 1000 597 Pepper mild mottle virus isolate M2-PMMoV 180k replication protein gene, partial cds; and movement protein and coat protein genes, complete cds blastn 40410 725 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus capsici
16045964 16045964 PRJNA763243_P_NODE_41333_length_273_cov_7.165000_g40987_i0 PRJNA763243 41333 273 7.165 19.56045 Tobamovirus capsici 3432865 Viruses Viruses 494 3.46e-135   NTclustered gi|1893169063|gb|MT130388.1| 12239 g40987 i0 99.63 92.2930402930403 270 1 99 0 4 273 2416 2685 Pepper mild mottle virus isolate M2-PMMoV 180k replication protein gene, partial cds; and movement protein and coat protein genes, complete cds blastn 25196 494 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus capsici
17320975 17320975 PRJNA763243_P_NODE_13174_length_420_cov_16.363112_g12829_i0 PRJNA763243 13174 420 16.363112 68.7250704 Tobamovirus capsici 3432865 Viruses Viruses 750 0   NTclustered gi|1893169063|gb|MT130388.1| 12239 g12829 i0 99.045 96.2714285714286 419 3 99 1 1 418 4902 4484 Pepper mild mottle virus isolate M2-PMMoV 180k replication protein gene, partial cds; and movement protein and coat protein genes, complete cds blastn 40434 750 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus capsici
17322471 17322471 PRJNA763243_P_NODE_9194_length_490_cov_17.575540_g8852_i0 PRJNA763243 9194 490 17.57554 86.120146 Skokie tombus-like virus 2789423 Viruses Viruses 889 0   NTclustered gi|1933757591|gb|MW177750.1| 2789423 g8852 i0 99.388 1.99795918367347 490 3 100 0 1 490 210 699 Skokie tombus-like virus strain USAdp hypothetical protein 2 gene, partial cds blastn 979 889 1 Viruses   Orthornavirae Kitrinoviricota Tolucaviricetes Tolivirales Tombusviridae   Skokie tombus-like virus
18594365 18594365 PRJNA763243_P_NODE_15975_length_387_cov_10.592357_g15630_i0 PRJNA763243 15975 387 10.592357 40.99242159 Tobamovirus capsici 3432865 Viruses Viruses 702 0   NTclustered gi|1893169063|gb|MT130388.1| 12239 g15630 i0 100 93.8785529715762 380 0 98 0 4 383 1220 1599 Pepper mild mottle virus isolate M2-PMMoV 180k replication protein gene, partial cds; and movement protein and coat protein genes, complete cds blastn 36331 702 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus capsici
18594910 18594910 PRJNA763243_P_NODE_39335_length_278_cov_11.370732_g38989_i0 PRJNA763243 39335 278 11.370732 31.61063496 Skokie tombus-like virus 2789423 Viruses Viruses 508 1.26e-139   NTclustered gi|1935607036|gb|MT747993.1| 2789423 g38989 i0 99.64 2 278 1 100 0 1 278 507 230 Skokie tombus-like virus strain USAdp-1 RNA-dependent RNA polymerase gene, complete cds blastn 556 508 1 Viruses   Orthornavirae Kitrinoviricota Tolucaviricetes Tolivirales Tombusviridae   Skokie tombus-like virus
21146522 21146522 PRJNA763243_P_NODE_69857_length_221_cov_5.250000_g69511_i0 PRJNA763243 69857 221 5.25 11.6025 Tobamovirus capsici 3432865 Viruses Viruses 385 1.6999999999999995e-102   NTclustered gi|1893169063|gb|MT130388.1| 12239 g69511 i0 98.618 96.5565610859728 217 3 98 0 4 220 1666 1882 Pepper mild mottle virus isolate M2-PMMoV 180k replication protein gene, partial cds; and movement protein and coat protein genes, complete cds blastn 21339 385 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus capsici
22421428 22421428 PRJNA763243_P_NODE_8218_length_513_cov_12.831818_g7877_i0 PRJNA763243 8218 513 12.831818 65.82722634 Tobamovirus tropici 3432893 Viruses Viruses 933 0   NTclustered gi|1893169051|gb|MT130385.1| 327387 g7877 i0 99.803 11.8752436647173 508 1 99 0 4 511 2601 2094 Tropical soda apple mosaic virus isolate I4-11-TSAMV 183 kDa replicase, movement protein, and coat protein genes, complete cds blastn 6092 933 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus tropici
24969532 24969532 PRJNA763243_P_NODE_24780_length_324_cov_14.852590_g24434_i0 PRJNA763243 24780 324 14.85259 48.1223916 Tobamovirus capsici 3432865 Viruses Viruses 568 2.4399999999999993e-157   NTclustered gi|1893169063|gb|MT130388.1| 12239 g24434 i0 98.746 96.5092592592593 319 4 98 0 3 321 3048 2730 Pepper mild mottle virus isolate M2-PMMoV 180k replication protein gene, partial cds; and movement protein and coat protein genes, complete cds blastn 31269 568 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus capsici
27621982 27621982 PRJNA763243_P_NODE_57284_length_246_cov_1.156069_g56938_i0 PRJNA763243 57284 246 1.156069 2.84392974 Hobart betaflexivirus 1 2201305 Viruses Viruses 150 1.17e-41   NR AWK77907.1 2201305 g56938 i0 86.4 0.98780487804878 81 11 98.8 0 244 2 123 203 AWK77907.1 movement protein [Hobart betaflexivirus 1] diamond 243 150 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae   Hobart betaflexivirus 1

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;