RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA763243" and tax_phylum = "Armatimonadota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Armatimonadota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA763243 · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3294512 3294512 PRJNA763243_P_NODE_36683_length_285_cov_43.745283_g36337_i0 PRJNA763243 36683 285 43.745283 124.67405655 uncultured Armatimonadetes bacterium 157466 Bacteria Bacteria 429 1.04e-115   NTclustered gi|156121571|gb|EF447059.1| 157466 g36337 i0 95.849 90.5684210526316 265 11 93 0 9 273 265 1 Uncultured candidate division OP10 bacterium clone 1317 16S ribosomal RNA gene, partial sequence blastn 25812 429 1 Bacteria   Bacillati Armatimonadota         uncultured Armatimonadetes bacterium
5847618 5847618 PRJNA763243_P_NODE_73045_length_206_cov_5.270677_g72699_i0 PRJNA763243 73045 206 5.270677 10.85759462 Fimbriimonadaceae bacterium 2682144 Bacteria Bacteria 176 1.02e-39   NTclustered gi|2076452338|gb|CP075364.1| 2682144 g72699 i0 82.039 61.4805825242718 206 37 100 0 1 206 667425 667630 MAG: Fimbriimonadaceae bacterium isolate ACE_ARM1 chromosome blastn 12665 176 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae   Fimbriimonadaceae bacterium
12222860 12222860 PRJNA763243_P_NODE_37070_length_284_cov_10.739336_g36724_i0 PRJNA763243 37070 284 10.739336 30.49971424 uncultured Armatimonadetes bacterium 157466 Bacteria Bacteria 178 4.15e-40   NTclustered gi|2874253689|emb|OY969415.1| 157466 g36724 i0 81.333 48.6584507042254 225 36 78 6 52 273 3914811 3915032 MAG: uncultured Armatimonadetes bacterium isolate MFD00905.bin.2.19 genome assembly, chromosome: 1 blastn 13819 178 1 Bacteria   Bacillati Armatimonadota         uncultured Armatimonadetes bacterium
22882939 22882939 PRJNA763243_P_NODE_39418_length_278_cov_2.887805_g39072_i0 PRJNA763243 39418 278 2.887805 8.0280979 Chthonomonas 1077265 Bacteria Bacteria 239 1.83e-58   NTclustered gi|526641997|ref|NR_103994.1| 454171 g39072 i0 86.758 133.672661870504 219 23 78 6 61 276 1235 1020 Chthonomonas calidirosea strain T49 23S ribosomal RNA gene, complete sequence blastn 37161 239 1 Bacteria   Bacillati Armatimonadota Chthonomonadia Chthonomonadales Chthonomonadaceae Chthonomonas Chthonomonas calidirosea
22883003 22883003 PRJNA763243_P_NODE_56958_length_246_cov_2.560694_g56612_i0 PRJNA763243 56958 246 2.560694 6.29930724 Fimbriimonas 1005038 Bacteria Bacteria 315 2.57e-81   NTclustered gi|663071213|gb|CP007139.1| 661478 g56612 i0 92.308 235.434959349593 221 17 90 0 15 235 28471 28251 Fimbriimonas ginsengisoli Gsoil 348, complete genome blastn 57917 315 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae Fimbriimonas Fimbriimonas ginsengisoli
32117701 32117701 PRJNA763243_P_NODE_66718_length_232_cov_8.471698_g66372_i0 PRJNA763243 66718 232 8.471698 19.65433936 Armatimonadia 1042312 Bacteria Bacteria 134 4.7200000000000004e-36   NR MBC8143393.1 2033014 g66372 i0 89.2 5.74137931034483 74 8 95.7 0 227 6 282 355 MBC8143393.1 type IV pilus twitching motility protein PilT [Armatimonadota bacterium] diamond 1332 135 0.992592592592593 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;