RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA763243", tax_clade = "delta/epsilon subdivisions" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 3 ✖

tax_clade 1

  • delta/epsilon subdivisions · 3 ✖

bioproject 1

  • PRJNA763243 · 3 ✖

analysis 1

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3294700 3294700 PRJNA763243_P_NODE_45103_length_264_cov_40.827225_g44757_i0 PRJNA763243 45103 264 40.827225 107.783874 Deltaproteobacteria bacterium Smac51 2946587 Bacteria Bacteria 394 3.48e-105   NTclustered gi|2242725236|gb|CP026657.1| 2946587 g44757 i0 93.893 412.55303030303 262 14 99 2 1 261 2066885 2067145 Deltaproteobacteria bacterium Smac51 chromosome, complete genome blastn 108914 394 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium Smac51
4571872 4571872 PRJNA763243_P_NODE_50044_length_254_cov_2.038674_g49698_i0 PRJNA763243 50044 254 2.038674 5.17823196 Deltaproteobacteria bacterium Smac51 2946587 Bacteria Bacteria 281 2.7e-71   NTclustered gi|2242725236|gb|CP026657.1| 2946587 g49698 i0 87.251 0.988188976377953 251 26 98 6 3 251 831627 831873 Deltaproteobacteria bacterium Smac51 chromosome, complete genome blastn 251 281 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium Smac51
10946675 10946675 PRJNA763243_P_NODE_10869_length_457_cov_27.028646_g10526_i0 PRJNA763243 10869 457 27.028646 123.52091222 Deltaproteobacteria bacterium Smac51 2946587 Bacteria Bacteria 640 7.44e-179   NTclustered gi|2242725236|gb|CP026657.1| 2946587 g10526 i0 92.478 84.4004376367615 452 27 98 7 6 454 2065547 2065994 Deltaproteobacteria bacterium Smac51 chromosome, complete genome blastn 38571 640 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium Smac51

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;