RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA763243", tax_clade = "Sar" and tax_phylum = "Endomyxa"

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tax_superkingdom 1

tax_phylum 1

  • Endomyxa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA763243 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10948049 10948049 PRJNA763243_P_NODE_67089_length_231_cov_3.924051_g66743_i0 PRJNA763243 67089 231 3.924051 9.06455781 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 93.6 4.17e-20   NR SPQ94571.1 37360 g66743 i0 59.7 2.81818181818182 72 29 93.5 0 219 4 381 452 SPQ94571.1 unnamed protein product [Plasmodiophora brassicae] diamond 651 93.6 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
23695912 23695912 PRJNA763243_P_NODE_26719_length_315_cov_1.256198_g26373_i0 PRJNA763243 26719 315 1.256198 3.9570237 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 102 6.51e-23   NR CEP03425.1 37360 g26373 i0 64.6 17.2190476190476 82 29 78.1 0 300 55 474 555 CEP03425.1 hypothetical protein PBRA_003185 [Plasmodiophora brassicae] diamond 5424 103 0.990291262135922 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
31380509 31380509 PRJNA763243_P_NODE_57136_length_246_cov_1.641618_g56790_i0 PRJNA763243 57136 246 1.641618 4.03838028 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 70.9 5.01e-12   NR CEO95484.1 37360 g56790 i0 47.4 0.951219512195122 78 41 95.1 0 7 240 885 962 CEO95484.1 hypothetical protein PBRA_004210 [Plasmodiophora brassicae] diamond 234 70.9 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;