RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA763243", tax_clade = "PVC group" and tax_phylum = "Lentisphaerota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Lentisphaerota · 3 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJNA763243 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3294034 3294034 PRJNA763243_P_NODE_16843_length_379_cov_6.771242_g16498_i0 PRJNA763243 16843 379 6.771242 25.66300718 Victivallaceae bacterium 2793042 Bacteria Bacteria 300 1.17e-76   NTclustered gi|2621704067|emb|OY761536.1| 2793042 g16498 i0 82.073 213.802110817942 357 58 94 6 4 357 1446919 1447272 MAG: Victivallaceae bacterium isolate e353ef71-700a-4510-b67c-5bed4426050c genome assembly, chromosome: 1 blastn 81031 300 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria Victivallales Victivallaceae   Victivallaceae bacterium
7583404 7583404 PRJNA763243_P_NODE_75046_length_198_cov_4.040000_g74700_i0 PRJNA763243 75046 198 4.04 7.9992 Bacteria 2 Bacteria Bacteria 303 4.29e-78   NTclustered gi|2189495548|gb|CP091727.1| 2053569 g74700 i0 94.444 178.641414141414 198 10 99 1 1 197 948214 948411 MAG: Lentisphaeria bacterium isolate nC33_lr_bin.207.fa chromosome blastn 35371 303 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria       Lentisphaeria bacterium
31759892 31759892 PRJNA763243_P_NODE_63537_length_241_cov_0.916667_g63191_i0 PRJNA763243 63537 241 0.916667 2.20916747 Victivallales bacterium 2212475 Bacteria Bacteria 42.4 0.0489   NR MBR6060012.1 2212475 g63191 i0 31.9 0.858921161825726 69 36 73.4 2 203 27 701 768 MBR6060012.1 glycoside hydrolase family 95 protein [Victivallales bacterium] diamond 207 42.4 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria Victivallales     Victivallales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;