RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA763243", tax_clade = "FCB group" and tax_phylum = "Rhodothermota"

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tax_superkingdom 1

tax_phylum 1

  • Rhodothermota · 2 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 2 ✖

bioproject 1

  • PRJNA763243 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3294434 3294434 PRJNA763243_P_NODE_33483_length_295_cov_2.450450_g33137_i0 PRJNA763243 33483 295 2.45045 7.2288275 Roseithermus sacchariphilus 2893045 Bacteria Bacteria 161 4.3599999999999995e-35   NTclustered gi|1417721500|gb|CP030158.1| 2893045 g33137 i0 81.538 8.67118644067797 195 36 66 0 6 200 4170657 4170463 Roseithermus sacchariphilus strain MEBiC09517 chromosome, complete genome blastn 2558 161 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Salisaetaceae Roseithermus Roseithermus sacchariphilus
13497113 13497113 PRJNA763243_P_NODE_44311_length_266_cov_5.585492_g43965_i0 PRJNA763243 44311 266 5.585492 14.85740872 Rubrivirga sp. IMCC43871 3391575 Bacteria Bacteria 318 2.1699999999999998e-82   NTclustered gi|2890853429|gb|CP177355.1| 3391575 g43965 i0 88.39 94.4774436090226 267 28 99 3 2 265 807081 806815 Rubrivirga sp. IMCC43871 chromosome, complete genome blastn 25131 318 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae Rubrivirga Rubrivirga sp. IMCC43871

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;