RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA763243", tax_clade = "FCB group" and tax_phylum = "Ignavibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Ignavibacteriota · 4 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 4 ✖

bioproject 1

  • PRJNA763243 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28852996 28852996 PRJNA763243_P_NODE_27968_length_310_cov_23.362869_g27622_i0 PRJNA763243 27968 310 23.362869 72.4248939 Ignavibacteria bacterium 2053306 Bacteria Bacteria 104 1.85e-26   NR MBD1209761.1 2053306 g27622 i0 100 0.464516129032258 48 0 46.5 0 149 6 71 118 MBD1209761.1 DUF1987 domain-containing protein [Ignavibacteria bacterium] diamond 144 104 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria       Ignavibacteria bacterium
28884756 28884756 PRJNA763243_P_NODE_7208_length_542_cov_1.565032_g6869_i0 PRJNA763243 7208 542 1.565032 8.48247344 Stygiobacter sp. 3081216 Bacteria Bacteria 102 6.6e-23   NR KAF0140858.1 3081216 g6869 i0 42.9 0.619926199261993 112 63 61.4 1 530 198 150 261 KAF0140858.1 MAG: hypothetical protein FD122_2031 [Stygiobacter sp.] diamond 336 102 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria Ignavibacteriales Melioribacteraceae Stygiobacter Stygiobacter sp.
28894332 28894332 PRJNA763243_P_NODE_58288_length_245_cov_1.639535_g57942_i0 PRJNA763243 58288 245 1.639535 4.01686075 Bacteria 2 Bacteria Bacteria 60.5 2.09e-8   NR MCX6170770.1 2049428 g57942 i0 47 3.17142857142857 66 31 75.9 1 58 243 10 75 MCX6170770.1 glycosyltransferase family 9 protein [Ignavibacteriales bacterium] diamond 777 60.8 0.995065789473684 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria Ignavibacteriales     Ignavibacteriales bacterium
31664925 31664925 PRJNA763243_P_NODE_64057_length_241_cov_0.904762_g63711_i0 PRJNA763243 64057 241 0.904762 2.18047642 Ignavibacteria bacterium 2053306 Bacteria Bacteria 83.2 8.61e-17   NR MDP3442279.1 2053306 g63711 i0 45.5 2.87551867219917 77 42 95.9 0 234 4 128 204 MDP3442279.1 LysR family transcriptional regulator [Ignavibacteria bacterium] diamond 693 83.2 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria       Ignavibacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;