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contig_metadata

16 rows where bioproject = "PRJNA763243", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 16 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 16 ✖

bioproject 1

  • PRJNA763243 · 16 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3295251 3295251 PRJNA763243_P_NODE_70043_length_220_cov_6.517007_g69697_i0 PRJNA763243 70043 220 6.517007 14.3374154 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 270 4.9399999999999996e-68   NTclustered gi|2874253789|emb|OY969773.1| 412054 g69697 i0 89.091 55.4181818181818 220 20 99 4 1 218 421038 421255 MAG: uncultured Gemmatimonadales bacterium isolate MFD04580.bin.2.49 genome assembly, chromosome: 1 blastn 12192 270 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
4571754 4571754 PRJNA763243_P_NODE_44684_length_265_cov_15.447917_g44338_i0 PRJNA763243 44684 265 15.447917 40.93698005 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 315 2.8e-81   NTclustered gi|575456455|gb|CP007128.1| 861299 g44338 i0 88.258 110.154716981132 264 29 99 2 2 264 3043366 3043628 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 29191 315 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
4571833 4571833 PRJNA763243_P_NODE_48044_length_258_cov_2.908108_g47698_i0 PRJNA763243 48044 258 2.908108 7.50291864 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 339 1.6099999999999998e-88   NTclustered gi|2874253978|emb|OY970303.1| 412054 g47698 i0 91.463 309.937984496124 246 21 95 0 3 248 1903471 1903716 MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 blastn 79964 339 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
5847602 5847602 PRJNA763243_P_NODE_7225_length_541_cov_5.059829_g6885_i0 PRJNA763243 7225 541 5.059829 27.37367489 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 621 3.2299999999999996e-173   NTclustered gi|575456455|gb|CP007128.1| 861299 g6885 i0 87.85 71.7634011090573 535 58 98 6 1 532 3042836 3042306 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 38824 621 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
8397008 8397008 PRJNA763243_P_NODE_60547_length_243_cov_2.635294_g60201_i0 PRJNA763243 60547 243 2.635294 6.40376442 Gemmatimonas phototrophica 1379270 Bacteria Bacteria 327 3.25e-85   NTclustered gi|1015602748|gb|CP011454.1| 1379270 g60201 i0 91.322 393.674897119342 242 18 99 3 1 240 2076588 2076348 Gemmatimonas phototrophica strain AP64, complete genome blastn 95663 327 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas phototrophica
9671116 9671116 PRJNA763243_P_NODE_15608_length_391_cov_1.823899_g15263_i0 PRJNA763243 15608 391 1.823899 7.13144509 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 464 4.05e-126   NTclustered gi|575456455|gb|CP007128.1| 861299 g15263 i0 88.689 97.4936061381074 389 33 98 10 5 389 3042861 3042480 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 38120 464 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
12223127 12223127 PRJNA763243_P_NODE_48010_length_258_cov_3.772973_g47664_i0 PRJNA763243 48010 258 3.772973 9.73427034 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 381 2.639999999999999e-101   NTclustered gi|2874253728|emb|OY969570.1| 412054 g47664 i0 94.024 101.62015503876 251 15 99 0 8 258 172624 172874 MAG: uncultured Gemmatimonadales bacterium isolate MFD02840.bin.c.1 genome assembly, chromosome: 1 blastn 26218 381 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
12223803 12223803 PRJNA763243_P_NODE_75430_length_196_cov_11.886179_g75084_i0 PRJNA763243 75430 196 11.886179 23.29691084 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 255 1.2e-63   NTclustered gi|2874253978|emb|OY970303.1| 412054 g75084 i0 90.722 184.918367346939 194 15 98 3 1 193 1904570 1904761 MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 blastn 36244 255 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
13959366 13959366 PRJNA763243_P_NODE_73691_length_203_cov_11.230769_g73345_i0 PRJNA763243 73691 203 11.230769 22.79846107 Gemmatirosa 1706036 Bacteria Bacteria 224 3.539999999999999e-54   NTclustered gi|2874253789|emb|OY969773.1| 412054 g73345 i0 87.065 65.3004926108374 201 23 98 3 1 199 420954 420755 MAG: uncultured Gemmatimonadales bacterium isolate MFD04580.bin.2.49 genome assembly, chromosome: 1 blastn 13256 224 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
17321715 17321715 PRJNA763243_P_NODE_45134_length_264_cov_13.832461_g44788_i0 PRJNA763243 45134 264 13.832461 36.51769704 Roseisolibacter agri 2014610 Bacteria Bacteria 118 7.369999999999998e-32   NR WP_284352046.1 2014610 g44788 i0 87.3 1.61363636363636 71 9 80.7 0 220 8 1 71 WP_284352046.1 ExbD/TolR family protein [Roseisolibacter agri] diamond 426 118 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Roseisolibacter Roseisolibacter agri
19056946 19056946 PRJNA763243_P_NODE_30695_length_306_cov_17.300429_g30349_i0 PRJNA763243 30695 306 17.300429 52.93931274 Gemmatimonas 173479 Bacteria Bacteria 315 3.3000000000000003e-81   NTclustered gi|470475286|ref|NR_076270.1| 173480 g30349 i0 85.667 142.261437908497 300 41 98 2 7 306 1 298 Gemmatimonas aurantiaca strain T-27 23S ribosomal RNA gene, complete sequence blastn 43532 315 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas aurantiaca
21145572 21145572 PRJNA763243_P_NODE_28237_length_310_cov_10.324895_g27891_i0 PRJNA763243 28237 310 10.324895 32.0071745 Gemmatimonas groenlandica 2732249 Bacteria Bacteria 193 1.64e-44   NTclustered gi|1839994010|gb|CP053085.1| 2732249 g27891 i0 79.221 9.10967741935484 308 41 98 13 3 305 1102835 1103124 Gemmatimonas groenlandica strain TET16 chromosome, complete genome blastn 2824 193 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas groenlandica
24969651 24969651 PRJNA763243_P_NODE_29540_length_310_cov_2.915612_g29194_i0 PRJNA763243 29540 310 2.915612 9.0383972 Gemmatimonas phototrophica 1379270 Bacteria Bacteria 257 5.72e-64   NTclustered gi|1015602748|gb|CP011454.1| 1379270 g29194 i0 82.295 123.064516129032 305 39 98 7 1 304 2074985 2074695 Gemmatimonas phototrophica strain AP64, complete genome blastn 38150 257 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas phototrophica
29200729 29200729 PRJNA763243_P_NODE_53369_length_250_cov_0.870056_g53023_i0 PRJNA763243 53369 250 0.870056 2.17514 Roseisolibacter agri 2014610 Bacteria Bacteria 122 5.2e-30   NR WP_284351515.1 2014610 g53023 i0 70.1 0.924 77 23 92.4 0 6 236 879 955 WP_284351515.1 TonB-dependent receptor [Roseisolibacter agri] diamond 231 122 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Roseisolibacter Roseisolibacter agri
29768767 29768767 PRJNA763243_P_NODE_41831_length_272_cov_2.658291_g41485_i0 PRJNA763243 41831 272 2.658291 7.23055152 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 60.5 2.83e-8   NR MDP3775168.1 2448054 g41485 i0 36.5 3.39705882352941 85 53 92.6 1 5 256 197 281 MDP3775168.1 hypothetical protein [Gemmatimonadales bacterium] diamond 924 60.5 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
31791326 31791326 PRJNA763243_P_NODE_25297_length_322_cov_1.373494_g24951_i0 PRJNA763243 25297 322 1.373494 4.42265068 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 43.9 0.0346   NR HEU5219727.1 2448054 g24951 i0 29.3 1.08074534161491 116 65 95 5 322 17 41 153 HEU5219727.1 acyl-CoA dehydrogenase family protein [Gemmatimonadales bacterium] diamond 348 43.9 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;