RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

7 rows where bioproject = "PRJNA763243" and tax_clade = "Apusozoa"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_clade 1

  • Apusozoa · 7 ✖

bioproject 1

  • PRJNA763243 · 7 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
19870606 19870606 PRJNA763243_P_NODE_61696_length_242_cov_3.431953_g61350_i0 PRJNA763243 61696 242 3.431953 8.30532626 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 128 1.03e-33   NR XP_013758005.1 461836 g61350 i0 74.4 1.93388429752066 78 20 96.7 0 239 6 167 244 XP_013758005.1 uncharacterized protein AMSG_05289 [Thecamonas trahens ATCC 50062] diamond 468 129 0.992248062015504 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
21145908 21145908 PRJNA763243_P_NODE_42337_length_271_cov_1.833333_g41991_i0 PRJNA763243 42337 271 1.833333 4.96833243 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 116 6.54e-28   NR XP_013757543.1 461836 g41991 i0 70.1 1.70479704797048 77 23 85.2 0 34 264 453 529 XP_013757543.1 Ca2:Cation Antiporter family [Thecamonas trahens ATCC 50062] diamond 462 116 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
22421423 22421423 PRJNA763243_P_NODE_8098_length_516_cov_10.668172_g7757_i0 PRJNA763243 8098 516 10.668172 55.04776752 Podomonas capensis 2925399 Root_unresolved Root_unresolved 215 6.09e-51   NTclustered gi|2206682168|gb|OM966641.1| 2925399 g7757 i0 77.869 23.843023255814 366 68 70 10 38 399 3570 3926 Podomonas capensis strain SPRINTER small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 12303 215 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Podomonas Podomonas capensis
27337770 27337770 PRJNA763243_P_NODE_66903_length_232_cov_2.157233_g66557_i0 PRJNA763243 66903 232 2.157233 5.00478056 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 87.8 3.56e-18   NR XP_013757797.1 461836 g66557 i0 52 0.969827586206897 75 35 97 1 230 6 135 208 XP_013757797.1 beta-lactamase [Thecamonas trahens ATCC 50062] diamond 225 87.8 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
28831207 28831207 PRJNA763243_P_NODE_61948_length_242_cov_1.591716_g61602_i0 PRJNA763243 61948 242 1.591716 3.85195272 root 1 Root_unresolved Root_unresolved 105 7.33e-27   NR XP_013759960.1 461836 g61602 i0 64 1.79752066115702 75 27 93 0 16 240 17 91 XP_013759960.1 40S ribosomal protein S12 [Thecamonas trahens ATCC 50062] diamond 435 105 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
30684967 30684967 PRJNA763243_P_NODE_56693_length_247_cov_0.879310_g56347_i0 PRJNA763243 56693 247 0.87931 2.1718957 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 63.2 2.5e-9   NR XP_013757871.1 461836 g56347 i0 49.3 1.67611336032389 69 32 81.4 2 12 212 469 536 XP_013757871.1 uncharacterized protein AMSG_05458 [Thecamonas trahens ATCC 50062] diamond 414 63.2 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
31443585 31443585 PRJNA763243_P_NODE_56656_length_247_cov_0.885057_g56310_i0 PRJNA763243 56656 247 0.885057 2.18609079 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 60.8 1.71e-8   NR XP_013761416.1 461836 g56310 i0 45.8 0.874493927125506 72 35 87.4 1 243 28 3380 3447 XP_013761416.1 uncharacterized protein AMSG_01915 [Thecamonas trahens ATCC 50062] diamond 216 60.8 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;