RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

10 rows where bioproject = "PRJNA763243", tax_clade = "Amoebozoa" and tax_phylum = "Tubulinea"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 10 ✖

tax_clade 1

  • Amoebozoa · 10 ✖

bioproject 1

  • PRJNA763243 · 10 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1205234 1205234 PRJNA763243_P_NODE_68561_length_226_cov_88.169935_g68215_i0 PRJNA763243 68561 226 88.169935 199.2640531 Tubulinea 555369 Tubulinea other_Eukaryota 412 8.01e-111   NTclustered gi|11527302|gb|AF293895.1|AF293895 136450 g68215 i0 100 99.8982300884956 223 0 99 0 1 223 1671 1449 Echinamoeba exundans small subunit ribosomal RNA gene, complete sequence blastn 22577 412 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida   Echinamoebidae Echinamoeba Echinamoeba exundans
2018691 2018691 PRJNA763243_P_NODE_13942_length_410_cov_9.614243_g13597_i0 PRJNA763243 13942 410 9.614243 39.4183963 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 339 2.6999999999999994e-88   NTclustered gi|292559443|ref|NC_013986.1| 5778 g13597 i0 81.951 2.18536585365854 410 64 99 9 1 407 25992 25590 Hartmannella vermiformis mitochondrion, complete genome blastn 896 339 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
10946712 10946712 PRJNA763243_P_NODE_12309_length_433_cov_2.991667_g11964_i0 PRJNA763243 12309 433 2.991667 12.95391811 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 649 0   NTclustered gi|909719647|gb|KT185627.1| 5778 g11964 i0 97.135 67.729792147806 384 11 89 0 49 432 20274 20657 Vermamoeba vermiformis isolate BCP-EM3VF21-2 mitochondrion, complete genome blastn 29327 649 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
11408914 11408914 PRJNA763243_P_NODE_16269_length_384_cov_14.398714_g15924_i0 PRJNA763243 16269 384 14.398714 55.29106176 root 1 Root_unresolved Root_unresolved 595 1.35e-165   NTclustered gi|292559443|ref|NC_013986.1| 5778 g15924 i0 94.987 46.2552083333333 379 19 99 0 4 382 19552 19930 Hartmannella vermiformis mitochondrion, complete genome blastn 17762 595 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
15233647 15233647 PRJNA763243_P_NODE_1872_length_941_cov_121.673963_g1654_i0 PRJNA763243 1872 941 121.673963 1144.95199183 Vermamoeba 1260114 Tubulinea other_Eukaryota 1672 0   NTclustered gi|909719645|gb|KT185625.1| 5778 g1654 i0 98.827 79.2529224229543 938 11 99 0 4 941 4884 5821 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 74577 1672 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
15233801 15233801 PRJNA763243_P_NODE_6212_length_575_cov_284.812749_g5883_i0 PRJNA763243 6212 575 284.812749 1637.67330675 Tubulinea 555369 Tubulinea other_Eukaryota 1053 0   NTclustered gi|11527302|gb|AF293895.1|AF293895 136450 g5883 i0 100 79.5095652173913 570 0 99 0 4 573 592 1161 Echinamoeba exundans small subunit ribosomal RNA gene, complete sequence blastn 45718 1053 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida   Echinamoebidae Echinamoeba Echinamoeba exundans
17782848 17782848 PRJNA763243_P_NODE_36614_length_286_cov_1.131455_g36268_i0 PRJNA763243 36614 286 1.131455 3.2359613 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 497 2.82e-136   NTclustered gi|2304349765|gb|OP454456.1| 5778 g36268 i0 100 51.5559440559441 269 0 94 0 3 271 337 605 Vermamoeba vermiformis strain JR1 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence blastn 14745 501 0.992015968063872 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
21145245 21145245 PRJNA763243_P_NODE_14617_length_402_cov_4.495441_g14272_i0 PRJNA763243 14617 402 4.495441 18.07167282 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 350 1.22e-91   NTclustered gi|292559443|ref|NC_013986.1| 5778 g14272 i0 83.376 32.0547263681592 391 52 96 9 14 399 27227 26845 Hartmannella vermiformis mitochondrion, complete genome blastn 12886 350 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
22419862 22419862 PRJNA763243_P_NODE_10338_length_467_cov_174.248731_g9995_i0 PRJNA763243 10338 467 174.248731 813.74157377 Rhizamoeba saxonica 200886 Tubulinea other_Eukaryota 150 1.5599999999999998e-31   NTclustered gi|300078497|gb|GU001159.1| 200886 g9995 i0 81.481 40.796573875803 189 30 40 5 4 189 4123 4309 Rhizamoeba saxonica 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 19052 150 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae Rhizamoeba Rhizamoeba saxonica
24970287 24970287 PRJNA763243_P_NODE_5660_length_598_cov_53.373333_g5336_i0 PRJNA763243 5660 598 53.373333 319.17253134 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 1033 0   NTclustered gi|300078496|gb|GU001158.1| 5778 g5336 i0 97.83 18.5602006688963 599 12 100 1 1 598 1814 1216 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 11099 1033 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;