RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA760976" and tax_phylum = "Fornicata"

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tax_superkingdom 1

tax_phylum 1

  • Fornicata · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA760976 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28726902 28726902 PRJNA760976_P_NODE_24867_length_323_cov_1.528000_g24546_i0 PRJNA760976 24867 323 1.528 4.93544 Giardia intestinalis 5741 Fornicata other_Eukaryota 50.8 1.36e-4   NR ESU40154.1 5741 g24546 i0 47.6 2.58204334365325 42 22 39 0 1 126 406 447 ESU40154.1 Variant-specific surface protein, partial [Giardia intestinalis] diamond 834 50.8 1 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Giardia Giardia duodenalis
30189114 30189114 PRJNA760976_P_NODE_16972_length_369_cov_2.702703_g16651_i0 PRJNA760976 16972 369 2.702703 9.97297407 Giardia 5740 Fornicata other_Eukaryota 45.8 0.00268   NR ESU39623.1 5741 g16651 i0 50 2 52 26 42.3 0 159 4 40 91 ESU39623.1 Variant-specific surface protein [Giardia intestinalis] diamond 738 45.8 1 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Giardia Giardia duodenalis
32202847 32202847 PRJNA760976_P_NODE_49858_length_248_cov_0.862857_g49537_i0 PRJNA760976 49858 248 0.862857 2.13988536 Hexamita inflata 28002 Fornicata other_Eukaryota 55.8 7.71e-7   NR CAK8793668.1 28002 g49537 i0 47.9 0.580645161290323 48 25 58.1 0 5 148 65 112 CAK8793668.1 HINF_078939 [Hexamita inflata] diamond 144 55.8 1 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Hexamita Hexamita inflata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;