RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA760976" and tax_kingdom = "Thermotogati"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Thermotogati · 4 ✖

bioproject 1

  • PRJNA760976 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2018484 2018484 PRJNA760976_P_NODE_7722_length_496_cov_2.068558_g7403_i0 PRJNA760976 7722 496 2.068558 10.26004768 Deinococcus grandis 57498 Bacteria Bacteria 817 0   NTclustered gi|1751871007|dbj|AP021849.1| 57498 g7403 i0 97.113 247.145161290323 485 12 100 2 1 484 73360 73843 Deinococcus grandis ATCC 43672 DNA, complete genome blastn 122584 817 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus grandis
5033282 5033282 PRJNA760976_P_NODE_12904_length_407_cov_2.266467_g12584_i0 PRJNA760976 12904 407 2.266467 9.22452069 Deinococcus 1298 Bacteria Bacteria 750 0   NTclustered gi|2113031129|gb|OK500351.1| 47478 g12584 i0 100 103.87714987715 406 0 99 0 2 407 751 346 Deinococcus sp. strain R11 16S ribosomal RNA gene, partial sequence blastn 42278 750 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp.
5845858 5845858 PRJNA760976_P_NODE_10125_length_447_cov_1.636364_g9806_i0 PRJNA760976 10125 447 1.636364 7.31454708 Deinococcus soli (ex Cha et al. 2016) 1309411 Bacteria Bacteria 824 0   NTclustered gi|821341785|gb|CP011389.1| 1309411 g9806 i0 100 206.910514541387 446 0 99 0 1 446 1885989 1886434 'Deinococcus soli' Cha et al. 2014 strain N5, complete genome blastn 92489 824 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus soli (ex Cha et al. 2016)
30621710 30621710 PRJNA760976_P_NODE_50933_length_246_cov_1.393064_g50612_i0 PRJNA760976 50933 246 1.393064 3.42693744 Deinococcus sp. Arct2-2 2568653 Bacteria Bacteria 52 2.18e-5   NR WP_136365247.1 2568653 g50612 i0 44.4 0.98780487804878 81 28 97.6 3 243 4 131 195 WP_136365247.1 hypothetical protein [Deinococcus sp. Arct2-2] diamond 243 52 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp. Arct2-2

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;