RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA760976", tax_kingdom = "Pseudomonadati" and tax_phylum = "Nitrospirota"

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tax_superkingdom 1

tax_phylum 1

  • Nitrospirota · 2 ✖

tax_kingdom 1

  • Pseudomonadati · 2 ✖

bioproject 1

  • PRJNA760976 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28442872 28442872 PRJNA760976_P_NODE_48026_length_251_cov_0.865169_g47705_i0 PRJNA760976 48026 251 0.865169 2.17157419 Nitrospirota bacterium 2026887 Bacteria Bacteria 70.5 2.4e-12   NR MBF0563736.1 2026887 g47705 i0 46.2 1.86454183266932 78 35 87.3 2 244 26 41 116 MBF0563736.1 cupredoxin domain-containing protein [Nitrospirota bacterium] diamond 468 70.5 1 Bacteria   Pseudomonadati Nitrospirota         Nitrospirota bacterium
32076257 32076257 PRJNA760976_P_NODE_3678_length_680_cov_2.616145_g3374_i0 PRJNA760976 3678 680 2.616145 17.789786 Nitrospirota bacterium 2026887 Bacteria Bacteria 94.4 3.52e-20   NR MEW5746695.1 2026887 g3374 i0 41.7 0.476470588235294 108 63 47.6 0 41 364 62 169 MEW5746695.1 Hsp20/alpha crystallin family protein [Nitrospirota bacterium] diamond 324 94.4 1 Bacteria   Pseudomonadati Nitrospirota         Nitrospirota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;