RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA760976" and tax_kingdom = "Methanobacteriati"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_kingdom 1

  • Methanobacteriati · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA760976 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28262799 28262799 PRJNA760976_P_NODE_51966_length_245_cov_0.895349_g51645_i0 PRJNA760976 51966 245 0.895349 2.19360505 Methanothrix 2222 Archaea Archaea 48.9 2.58e-4   NR WP_157863671.1 2223 g51645 i0 45.3 6.26938775510204 64 30 77.1 3 202 14 8 67 WP_157863671.1 trypsin-like serine protease [Methanothrix soehngenii] diamond 1536 48.9 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanotrichales Methanotrichaceae Methanothrix Methanothrix soehngenii
29137623 29137623 PRJNA760976_P_NODE_3509_length_696_cov_2.268058_g3206_i0 PRJNA760976 3509 696 2.268058 15.78568368 Thermoplasmatota archaeon 2806419 Archaea Archaea 121 4.44e-30   NR HWG91149.1 2806419 g3206 i0 32.6 0.741379310344828 172 116 74.1 0 582 67 6 177 HWG91149.1 hypothetical protein [Thermoplasmatota archaeon] diamond 516 121 1 Archaea   Methanobacteriati Thermoplasmatota         Thermoplasmatota archaeon

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;