RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA760976", tax_clade = "Sar" and tax_phylum = "Endomyxa"

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tax_superkingdom 1

tax_phylum 1

  • Endomyxa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA760976 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30464280 30464280 PRJNA760976_P_NODE_38433_length_276_cov_1.182266_g38112_i0 PRJNA760976 38433 276 1.182266 3.26305416 Bonamia ostreae 126728 SAR_Eukaryotes SAR_Eukaryotes 45.8 0.00383   NR MES1919469.1 126728 g38112 i0 50 1.17391304347826 36 18 39.1 0 124 17 59 94 MES1919469.1 hypothetical protein [Bonamia ostreae] diamond 324 45.8 1 Eukaryota Sar   Endomyxa Ascetosporea Haplosporida   Bonamia Bonamia ostreae
30937946 30937946 PRJNA760976_P_NODE_36734_length_281_cov_1.004808_g36413_i0 PRJNA760976 36734 281 1.004808 2.82351048 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 87.4 8.02e-19   NR CEO98592.1 37360 g36413 i0 59.1 0.704626334519573 66 27 70.5 0 280 83 148 213 CEO98592.1 hypothetical protein PBRA_006706 [Plasmodiophora brassicae] diamond 198 87.4 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
32771241 32771241 PRJNA760976_P_NODE_37040_length_280_cov_1.086957_g36719_i0 PRJNA760976 37040 280 1.086957 3.0434796 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 47.4 0.00146   NR SPR00016.1 37360 g36719 i0 34.1 0.878571428571429 82 53 86.8 1 4 246 3368 3449 SPR00016.1 unnamed protein product [Plasmodiophora brassicae] diamond 246 47.4 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;