RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA760976", tax_clade = "PVC group" and tax_phylum = "Chlamydiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 4 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 4 ✖

bioproject 1

  • PRJNA760976 · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
742378 742378 PRJNA760976_P_NODE_381_length_1806_cov_4.244662_g300_i0 PRJNA760976 381 1806 4.244662 76.65859572 uncultured Parachlamydiaceae bacterium 464461 Bacteria Bacteria 2351 0   NTclustered gi|2874253811|emb|OY969795.1| 464461 g300 i0 90.252 117.550387596899 1826 141 99 30 3 1806 655386 653576 MAG: uncultured Parachlamydiaceae bacterium isolate MFD05502.bin.c.3 genome assembly, chromosome: 1 blastn 212296 2351 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   uncultured Parachlamydiaceae bacterium
28916098 28916098 PRJNA760976_P_NODE_39848_length_272_cov_1.155779_g39527_i0 PRJNA760976 39848 272 1.155779 3.14371888 Parachlamydiaceae bacterium 2052176 Bacteria Bacteria 95.5 1.2e-23   NR MBA3721671.1 2052176 g39527 i0 64.6 1.43382352941176 65 23 71.7 0 76 270 1 65 MBA3721671.1 CsbD family protein [Parachlamydiaceae bacterium] diamond 390 95.5 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   Parachlamydiaceae bacterium
30811400 30811400 PRJNA760976_P_NODE_35834_length_283_cov_1.442857_g35513_i0 PRJNA760976 35834 283 1.442857 4.08328531 Chlamydiota bacterium 2081524 Bacteria Bacteria 47.8 8.72e-4   NR MES2344608.1 2081524 g35513 i0 42.2 0.477031802120141 45 25 47.7 1 3 137 172 215 MES2344608.1 hypothetical protein [Chlamydiota bacterium] diamond 135 47.8 1 Bacteria PVC group Pseudomonadati Chlamydiota         Chlamydiota bacterium
30874591 30874591 PRJNA760976_P_NODE_46994_length_253_cov_1.633333_g46673_i0 PRJNA760976 46994 253 1.633333 4.13233249 Simkania sp. 34094 Bacteria Bacteria 152 4.39e-45   NR MCB1084326.1 34094 g46673 i0 78.3 0.984189723320158 83 18 98.4 0 253 5 47 129 MCB1084326.1 serine/threonine-protein kinase [Simkania sp.] diamond 249 152 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Simkaniaceae Simkania Simkania sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;