RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA760904", tax_phylum = "Thermoproteota" and tax_superkingdom = "Archaea"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

  • Archaea · 2 ✖

tax_phylum 1

  • Thermoproteota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA760904 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27874370 27874370 PRJNA760904_P_NODE_6265_length_347_cov_1.474453_g6208_i0 PRJNA760904 6265 347 1.474453 5.11635191 Desulfurococcales archaeon 2480821 Archaea Archaea 54.7 2.34e-6   NR NAZ13877.1 2480821 g6208 i0 40 0.518731988472622 60 36 51.9 0 182 3 59 118 NAZ13877.1 DUF3782 domain-containing protein [Desulfurococcales archaeon] diamond 180 54.7 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Desulfurococcales     Desulfurococcales archaeon
30084567 30084567 PRJNA760904_P_NODE_1212_length_698_cov_2.048000_g1159_i0 PRJNA760904 1212 698 2.048 14.29504 Thermoprotei archaeon 2250277 Archaea Archaea 67 2.74e-9   NR RLG82655.1 2250277 g1159 i0 39.6 0.842406876790831 91 52 37.8 1 390 127 138 228 RLG82655.1 MAG: hypothetical protein DRO40_07150 [Thermoprotei archaeon] diamond 588 67 1 Archaea   Thermoproteati Thermoproteota Thermoprotei       Thermoprotei archaeon

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;