RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA760904", tax_phylum = "Thermoplasmatota" and tax_superkingdom = "Archaea"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

  • Archaea · 2 ✖

tax_phylum 1

  • Thermoplasmatota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA760904 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28231124 28231124 PRJNA760904_P_NODE_13086_length_263_cov_1.078947_g13029_i0 PRJNA760904 13086 263 1.078947 2.83763061 Methanobacteriati 3366610 Archaea Archaea 64.3 7.98e-10   NR OIR22150.1 1888996 g13029 i0 39.1 7.97338403041825 87 35 99.2 2 3 263 30 98 OIR22150.1 MAG: hypothetical protein BET99_01285 [Marine Group III euryarchaeote CG-Epi2] diamond 2097 64.3 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata Candidatus Thermoprofundales     Marine Group III euryarchaeote CG-Epi2
30947675 30947675 PRJNA760904_P_NODE_16234_length_248_cov_1.748571_g16177_i0 PRJNA760904 16234 248 1.748571 4.33645608 root 1 Root_unresolved Root_unresolved 75.5 9.06e-14   NR MDR0335267.1 2052168 g16177 i0 57.1 7.92338709677419 63 25 76.2 1 190 2 2 62 MDR0335267.1 molecular chaperone DnaJ [Methanomassiliicoccaceae archaeon] diamond 1965 75.9 0.994729907773386 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata Methanomassiliicoccales Methanomassiliicoccaceae   Methanomassiliicoccaceae archaeon

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;