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contig_metadata

22 rows where bioproject = "PRJNA760904", tax_clade = "PVC group" and tax_phylum = "Verrucomicrobiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 22 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 22 ✖

bioproject 1

  • PRJNA760904 · 22 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2018264 2018264 PRJNA760904_P_NODE_21202_length_231_cov_2.417722_g21145_i0 PRJNA760904 21202 231 2.417722 5.58493782 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 339 1.41e-88   NTclustered gi|2874253768|emb|OY969715.1| 412056 g21145 i0 93.074 79.0735930735931 231 16 100 0 1 231 915849 915619 MAG: uncultured Verrucomicrobiae bacterium isolate MFD01916.bin.1.1 genome assembly, chromosome: 1 blastn 18266 339 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
2018275 2018275 PRJNA760904_P_NODE_3562_length_438_cov_1.191781_g3505_i0 PRJNA760904 3562 438 1.191781 5.22000078 Opitutia bacterium 2026771 Bacteria Bacteria 196 3.05e-58   NR NDH16516.1 2026771 g3505 i0 59 7.91095890410959 144 59 98.6 0 1 432 43 186 NDH16516.1 phosphoenolpyruvate carboxykinase (GTP) [Opitutia bacterium] diamond 3465 196 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia       Opitutia bacterium
14771136 14771136 PRJNA760904_P_NODE_17672_length_246_cov_0.890173_g17615_i0 PRJNA760904 17672 246 0.890173 2.18982558 Verrucomicrobiaceae 203557 Bacteria Bacteria 120 2.21e-30   NR GAA5476635.1 490095 g17615 i0 69.1 21.7439024390244 81 25 98.8 0 1 243 48 128 GAA5476635.1 UDP-glucose 4-epimerase [Haloferula helveola] diamond 5349 121 0.991735537190083 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Haloferula Haloferula helveola
14771198 14771198 PRJNA760904_P_NODE_8672_length_304_cov_2.385281_g8615_i0 PRJNA760904 8672 304 2.385281 7.25125424 Akkermansiaceae bacterium 2562705 Bacteria Bacteria 75 6.05e-9   NTclustered gi|2022020957|gb|CP059069.1| 2562705 g8615 i0 86.957 9.53618421052632 69 6 23 2 159 227 3177127 3177062 Akkermansiaceae bacterium strain AJA081-3 chromosome, complete genome blastn 2899 75 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae   Akkermansiaceae bacterium
16044892 16044892 PRJNA760904_P_NODE_16833_length_247_cov_1.764368_g16776_i0 PRJNA760904 16833 247 1.764368 4.35798896 Opitutaceae bacterium 2006848 Bacteria Bacteria 87.4 4.64e-19   NR MEO5958915.1 2006848 g16776 i0 71.2 1.48178137651822 59 17 71.7 0 66 242 9 67 MEO5958915.1 class I fructose-bisphosphate aldolase [Opitutaceae bacterium] diamond 366 87.4 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae   Opitutaceae bacterium
16044949 16044949 PRJNA760904_P_NODE_9633_length_290_cov_1.502304_g9576_i0 PRJNA760904 9633 290 1.502304 4.3566816 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 143 2.66e-39   NR RYD65414.1 2026800 g9576 i0 77.1 0.993103448275862 96 20 99.3 1 289 2 93 186 RYD65414.1 MAG: hypothetical protein EOP84_31955 [Verrucomicrobiaceae bacterium] diamond 288 143 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
24968863 24968863 PRJNA760904_P_NODE_3620_length_435_cov_1.596685_g3563_i0 PRJNA760904 3620 435 1.596685 6.94557975 Verrucomicrobia bacterium SCGC AG-212-E 1799654 Bacteria Bacteria 231 4.64e-71   NR OAI42991.1 1799654 g3563 i0 74.3 15.6206896551724 144 37 99.3 0 434 3 222 365 OAI42991.1 malate synthase A, partial [Verrucomicrobia bacterium SCGC AG-212-E04] diamond 6795 231 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobia bacterium SCGC AG-212-E04
27084769 27084769 PRJNA760904_P_NODE_3682_length_432_cov_1.635097_g3625_i0 PRJNA760904 3682 432 1.635097 7.06361904 Opitutaceae bacterium EW11 2161865 Bacteria Bacteria 61.6 7.64e-8   NR PTY08534.1 2161865 g3625 i0 34 0.673611111111111 97 64 67.4 0 321 31 193 289 PTY08534.1 hypothetical protein DB347_02845 [Opitutaceae bacterium EW11] diamond 291 61.6 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae   Opitutaceae bacterium EW11
27116121 27116121 PRJNA760904_P_NODE_6822_length_336_cov_1.171103_g6765_i0 PRJNA760904 6822 336 1.171103 3.93490608 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 48.9 7.56e-4   NR MBI2927208.1 2026799 g6765 i0 38.6 0.508928571428571 57 35 50.9 0 29 199 471 527 MBI2927208.1 SUMF1/EgtB/PvdO family nonheme iron enzyme [Verrucomicrobiota bacterium] diamond 171 48.9 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
27884042 27884042 PRJNA760904_P_NODE_14325_length_253_cov_1.438889_g14268_i0 PRJNA760904 14325 253 1.438889 3.64038917 Bacteria 2 Bacteria Bacteria 132 1.08e-35   NR MFL6538419.1 2201154 g14268 i0 71.4 22.9090909090909 84 24 99.6 0 252 1 188 271 MFL6538419.1 SDR family oxidoreductase [Chthoniobacterales bacterium] diamond 5796 133 0.992481203007519 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales     Chthoniobacterales bacterium
27915518 27915518 PRJNA760904_P_NODE_2565_length_506_cov_1.581986_g2508_i0 PRJNA760904 2565 506 1.581986 8.00484916 Nibricoccus 2576890 Bacteria Bacteria 148 2.82e-38   NR PTY02515.1 2161865 g2508 i0 45.9 4.04940711462451 170 88 99 2 5 505 448 616 PTY02515.1 hypothetical protein DB347_24250 [Opitutaceae bacterium EW11] diamond 2049 148 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae   Opitutaceae bacterium EW11
27978766 27978766 PRJNA760904_P_NODE_1365_length_663_cov_3.054237_g1311_i0 PRJNA760904 1365 663 3.054237 20.24959131 Verrucomicrobiota 74201 Bacteria Bacteria 291 6.509999999999998e-94   NR MDE1171617.1 72225 g1311 i0 75.9 16.3619909502262 187 45 84.6 0 1 561 254 440 MDE1171617.1 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme [Verrucomicrobium sp.] diamond 10848 292 0.996575342465753 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Verrucomicrobium Verrucomicrobium sp.
28127086 28127086 PRJNA760904_P_NODE_18925_length_244_cov_0.900585_g18868_i0 PRJNA760904 18925 244 0.900585 2.1974274 Verrucomicrobium sp. BvORR 72225 Bacteria Bacteria 54.3 3.29e-6   NR WP_050030939.1 1396418 g18868 i0 38.7 2.49590163934426 75 45 92.2 1 228 4 1171 1244 WP_050030939.1 S8 family serine peptidase [Verrucomicrobium sp. BvORR034] diamond 609 54.3 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Verrucomicrobium Verrucomicrobium sp. BvORR034
28758397 28758397 PRJNA760904_P_NODE_13127_length_262_cov_2.021164_g13070_i0 PRJNA760904 13127 262 2.021164 5.29544968 Chthoniobacter sp. 2510640 Bacteria Bacteria 85.1 4.96e-17   NR MDR3405335.1 2510640 g13070 i0 81.6 0.561068702290076 49 9 56.1 0 3 149 416 464 MDR3405335.1 translation elongation factor EF1A family protein [Chthoniobacter sp.] diamond 147 85.1 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales Chthoniobacteraceae Chthoniobacter Chthoniobacter sp.
29295215 29295215 PRJNA760904_P_NODE_749_length_863_cov_2.679747_g703_i0 PRJNA760904 749 863 2.679747 23.12621661 Verrucomicrobiia bacterium 2499141 Bacteria Bacteria 54.7 3.1e-4   NR HXI69412.1 2499141 g703 i0 28.3 0.896871378910776 258 142 82.7 12 779 66 198 432 HXI69412.1 immunoglobulin domain-containing protein [Verrucomicrobiia bacterium] diamond 774 54.7 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium
29705264 29705264 PRJNA760904_P_NODE_9350_length_293_cov_8.631818_g9293_i0 PRJNA760904 9350 293 8.631818 25.29122674 Candidatus Didemnitutus sp. 2814259 Bacteria Bacteria 53.5 1.13e-5   NR HVU15720.1 2814259 g9293 i0 42.6 0.921501706484642 54 31 55.3 0 184 23 646 699 HVU15720.1 toxin TcdB middle/N-terminal domain-containing protein [Candidatus Didemnitutus sp.] diamond 270 53.5 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Candidatus Didemnitutus Candidatus Didemnitutus sp.
29958288 29958288 PRJNA760904_P_NODE_10651_length_282_cov_1.320574_g10594_i0 PRJNA760904 10651 282 1.320574 3.72401868 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 44.3 0.0166   NR MCX6917058.1 2026799 g10594 i0 42.9 0.595744680851064 56 29 59.6 1 18 185 253 305 MCX6917058.1 hypothetical protein [Verrucomicrobiota bacterium] diamond 168 44.3 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
30052992 30052992 PRJNA760904_P_NODE_5571_length_364_cov_2.539519_g5514_i0 PRJNA760904 5571 364 2.539519 9.24384916 Chthoniobacter sp. 2510640 Bacteria Bacteria 227 3.95e-70   NR MDR3405335.1 2510640 g5514 i0 88.4 0.997252747252747 121 14 99.7 0 1 363 289 409 MDR3405335.1 translation elongation factor EF1A family protein [Chthoniobacter sp.] diamond 363 227 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales Chthoniobacteraceae Chthoniobacter Chthoniobacter sp.
30210887 30210887 PRJNA760904_P_NODE_3572_length_437_cov_1.494505_g3515_i0 PRJNA760904 3572 437 1.494505 6.53098685 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 99 1.06e-21   NR MEM7385718.1 2026799 g3515 i0 53.5 0.693363844393593 101 42 65.9 1 1 288 182 282 MEM7385718.1 SPFH domain-containing protein [Verrucomicrobiota bacterium] diamond 303 99 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
30621693 30621693 PRJNA760904_P_NODE_19813_length_242_cov_1.366864_g19756_i0 PRJNA760904 19813 242 1.366864 3.30781088 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 101 3.259999999999999e-23   NR MBM3869727.1 2026799 g19756 i0 57 1.95867768595041 79 34 97.9 0 242 6 97 175 MBM3869727.1 NADP transhydrogenase subunit alpha [Verrucomicrobiota bacterium] diamond 474 101 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
31886327 31886327 PRJNA760904_P_NODE_13957_length_256_cov_1.262295_g13900_i0 PRJNA760904 13957 256 1.262295 3.2314752 Lacunisphaera sp. 1961806 Bacteria Bacteria 77.8 7.59e-15   NR MDB6165412.1 1961806 g13900 i0 57.6 1.48828125 66 27 77.3 1 57 254 17 81 MDB6165412.1 N-hydroxyarylamine O-acetyltransferase [Lacunisphaera sp.] diamond 381 77.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Lacunisphaera Lacunisphaera sp.
32392641 32392641 PRJNA760904_P_NODE_19779_length_242_cov_1.662722_g19722_i0 PRJNA760904 19779 242 1.662722 4.02378724 Limisphaerales bacterium 2052186 Bacteria Bacteria 61.2 1.08e-8   NR KAF0179106.1 2052186 g19722 i0 48.5 4.72314049586777 68 34 83.1 1 1 201 108 175 KAF0179106.1 MAG: hypothetical protein FD161_1599 [Limisphaerales bacterium] diamond 1143 61.2 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Limisphaerales     Limisphaerales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;