RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA760904", tax_clade = "PVC group" and tax_phylum = "Lentisphaerota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Lentisphaerota · 2 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 2 ✖

bioproject 1

  • PRJNA760904 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
21144773 21144773 PRJNA760904_P_NODE_13917_length_256_cov_1.633880_g13860_i0 PRJNA760904 13917 256 1.63388 4.1827328 Victivallaceae bacterium 2793042 Bacteria Bacteria 56.6 5.57e-7   NR MCQ2380638.1 2793042 g13860 i0 42 0.94921875 81 43 94.9 2 7 249 270 346 MCQ2380638.1 hypothetical protein [Victivallaceae bacterium] diamond 243 56.6 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria Victivallales Victivallaceae   Victivallaceae bacterium
32519479 32519479 PRJNA760904_P_NODE_19319_length_243_cov_0.905882_g19262_i0 PRJNA760904 19319 243 0.905882 2.20129326 Lentisphaerota bacterium 1932692 Bacteria Bacteria 76.3 5.87e-14   NR MBT3375401.1 1932692 g19262 i0 52.1 1.79012345679012 71 34 87.7 0 21 233 718 788 MBT3375401.1 A-macroglobulin complement component [Lentisphaerota bacterium] diamond 435 76.3 1 Bacteria PVC group Pseudomonadati Lentisphaerota         Lentisphaerota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;