RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA760904", tax_clade = "PVC group" and tax_phylum = "Chlamydiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 7 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 7 ✖

bioproject 1

  • PRJNA760904 · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3293511 3293511 PRJNA760904_P_NODE_15523_length_250_cov_0.870056_g15466_i0 PRJNA760904 15523 250 0.870056 2.17514 uncultured Chlamydiales CRG2 88251 Bacteria Bacteria 387 5.459999999999998e-103   NTclustered gi|4336560|gb|AF097185.1| 88251 g15466 i0 99.528 105.032 212 1 85 0 21 232 1 212 Uncultured Chlamydiales CRG2 16S ribosomal RNA gene, partial sequence blastn 26258 387 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     uncultured Chlamydiales CRG2
28189883 28189883 PRJNA760904_P_NODE_12466_length_267_cov_2.329897_g12409_i0 PRJNA760904 12466 267 2.329897 6.22082499 Chlamydiales bacterium 2047757 Bacteria Bacteria 65.1 5.09e-10   NR MFT4551527.1 2047757 g12409 i0 37.3 0.932584269662921 83 48 91 2 20 262 36 116 MFT4551527.1 hypothetical protein [Chlamydiales bacterium] diamond 249 65.1 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium
28253179 28253179 PRJNA760904_P_NODE_10866_length_280_cov_1.487923_g10809_i0 PRJNA760904 10866 280 1.487923 4.1661844 Chlamydiia bacterium 2052156 Bacteria Bacteria 60.5 3.46e-8   NR MCB1108359.1 2052156 g10809 i0 45.3 0.803571428571429 75 39 79.3 2 261 40 285 358 MCB1108359.1 ankyrin repeat domain-containing protein [Chlamydiia bacterium] diamond 225 60.5 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia       Chlamydiia bacterium
28442863 28442863 PRJNA760904_P_NODE_2646_length_500_cov_1.442623_g2589_i0 PRJNA760904 2646 500 1.442623 7.213115 Candidatus Anoxychlamydiales bacterium 2705072 Bacteria Bacteria 251 7.39e-78   NR NGX33799.1 2705072 g2589 i0 68.5 6.954 165 52 99 0 5 499 205 369 NGX33799.1 Hydroxylamine reductase [Candidatus Anoxychlamydiales bacterium] diamond 3477 251 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Candidatus Anoxychlamydiales     Candidatus Anoxychlamydiales bacterium
31570337 31570337 PRJNA760904_P_NODE_6356_length_345_cov_1.352941_g6299_i0 PRJNA760904 6356 345 1.352941 4.66764645 Chlamydiota bacterium 2081524 Bacteria Bacteria 145 1.7999999999999998e-38   NR MES2121745.1 2081524 g6299 i0 64 1.98260869565217 114 41 99.1 0 4 345 230 343 MES2121745.1 leucyl aminopeptidase [Chlamydiota bacterium] diamond 684 145 1 Bacteria PVC group Pseudomonadati Chlamydiota         Chlamydiota bacterium
31570341 31570341 PRJNA760904_P_NODE_9836_length_289_cov_1.069444_g9779_i0 PRJNA760904 9836 289 1.069444 3.09069316 Chlamydiales bacterium 2047757 Bacteria Bacteria 45.1 0.00951   NR MFT4552970.1 2047757 g9779 i0 31.9 0.975778546712803 94 59 97.6 1 288 7 155 243 MFT4552970.1 hypothetical protein [Chlamydiales bacterium] diamond 282 45.1 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium
32834258 32834258 PRJNA760904_P_NODE_7900_length_316_cov_1.666667_g7843_i0 PRJNA760904 7900 316 1.666667 5.26666772 Chlamydiia bacterium 2052156 Bacteria Bacteria 54.7 5.62e-6   NR MCB1111545.1 2052156 g7843 i0 38 0.674050632911392 71 36 59.8 2 214 26 21 91 MCB1111545.1 PAS domain S-box protein [Chlamydiia bacterium] diamond 213 54.7 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia       Chlamydiia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;