RNAquarium Metadata Server
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contig_metadata

1 row where bioproject = "PRJNA760904", tax_clade = "CRuMs" and tax_superkingdom = "Eukaryota"

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tax_superkingdom 1

  • Eukaryota · 1 ✖

tax_clade 1

  • CRuMs · 1 ✖

bioproject 1

  • PRJNA760904 · 1 ✖

analysis 1

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18593964 18593964 PRJNA760904_P_NODE_7475_length_323_cov_18.200000_g7418_i0 PRJNA760904 7475 323 18.2 58.786 Mantamonas plastica 856889 Root_unresolved Root_unresolved 353 7.42e-93   NTclustered gi|508737323|dbj|AB766041.1| 856889 g7418 i0 89.568 88.7058823529412 278 29 86 0 11 288 278 1 Mantamonas plastica EF-1A mRNA for elongation factor 1alpha, complete cds, strain: CCAP 1946/1 blastn 28652 353 1 Eukaryota CRuMs         Mantamonadidae Mantamonas Mantamonas plastica

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;