RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA758770" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 7 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA758770 · 7 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26609675 26609675 PRJNA758770_S_NODE_26561_length_249_cov_0.886364_g26435_i0 PRJNA758770 26561 249 0.886364 2.20704636 Prosthecobacter debontii 48467 Bacteria Bacteria 157 1.5299999999999998e-42   NR WP_217699031.1 48467 g26435 i0 100 1 83 0 100 0 1 249 560 642 WP_217699031.1 beta strand repeat-containing protein [Prosthecobacter debontii] diamond 249 157 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Prosthecobacter Prosthecobacter debontii
26863578 26863578 PRJNA758770_S_NODE_24181_length_252_cov_0.871508_g24055_i0 PRJNA758770 24181 252 0.871508 2.19620016 Prosthecobacter sp. 1965333 Bacteria Bacteria 173 6.559999999999999e-48   NR WP_395719944.1 1965333 g24055 i0 97.6 2 84 2 100 0 1 252 3173 3256 WP_395719944.1 putative Ig domain-containing protein, partial [Prosthecobacter sp.] diamond 504 173 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Prosthecobacter Prosthecobacter sp.
26863579 26863579 PRJNA758770_S_NODE_25341_length_251_cov_0.876404_g25215_i0 PRJNA758770 25341 251 0.876404 2.19977404 Verrucomicrobiales bacterium 2026801 Bacteria Bacteria 115 1.09e-27   NR MBL9158133.1 2026801 g25215 i0 100 0.848605577689243 71 0 84.9 0 39 251 972 1042 MBL9158133.1 autotransporter-associated beta strand repeat-containing protein [Verrucomicrobiales bacterium] diamond 213 115 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales     Verrucomicrobiales bacterium
28316456 28316456 PRJNA758770_S_NODE_28386_length_247_cov_0.896552_g28260_i0 PRJNA758770 28386 247 0.896552 2.21448344 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 158 1.32e-44   NR HOC55733.1 2026799 g28260 i0 100 0.995951417004049 82 0 99.6 0 246 1 67 148 HOC55733.1 MFS transporter [Verrucomicrobiota bacterium] diamond 246 158 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
29989950 29989950 PRJNA758770_S_NODE_25451_length_251_cov_0.876404_g25325_i0 PRJNA758770 25451 251 0.876404 2.19977404 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 182 4.36e-53   NR HPU56588.1 2026799 g25325 i0 100 2.97609561752988 83 0 99.2 0 251 3 413 495 HPU56588.1 hypothetical protein [Verrucomicrobiota bacterium] diamond 747 182 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
30779800 30779800 PRJNA758770_S_NODE_32774_length_242_cov_0.923077_g32648_i0 PRJNA758770 32774 242 0.923077 2.23384634 Opitutia bacterium 2026771 Bacteria Bacteria 166 9.04e-48   NR NCC93894.1 2026771 g32648 i0 100 1.98347107438017 80 0 99.2 0 240 1 310 389 NCC93894.1 hypothetical protein [Opitutia bacterium] diamond 480 166 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia       Opitutia bacterium
32686369 32686369 PRJNA758770_S_NODE_25800_length_250_cov_0.881356_g25674_i0 PRJNA758770 25800 250 0.881356 2.20339 Pseudomonadati 3379134 Bacteria Bacteria 113 3.0900000000000003e-27   NR MBU4199398.1 2026799 g25674 i0 69.7 4.488 76 23 91.2 0 21 248 8 83 MBU4199398.1 integron integrase [Verrucomicrobiota bacterium] diamond 1122 113 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;