RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA758770" and tax_phylum = "Spirochaetota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Spirochaetota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA758770 · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2016760 2016760 PRJNA758770_S_NODE_30422_length_245_cov_0.877907_g30296_i0 PRJNA758770 30422 245 0.877907 2.15087215 Treponema sp. 166 Bacteria Bacteria 340 4.209999999999999e-89   NTclustered gi|2189480979|gb|CP091737.1| 166 g30296 i0 92.116 204.289795918367 241 19 98 0 1 241 1476060 1476300 MAG: Treponema sp. isolate nC27_bin.160.fa chromosome blastn 50051 340 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema sp.
16043038 16043038 PRJNA758770_S_NODE_13573_length_315_cov_1.289256_g13447_i0 PRJNA758770 13573 315 1.289256 4.0611564 Spirochaetota bacterium 2202144 Bacteria Bacteria 124 5.03e-32   NR MDI9386255.1 2202144 g13447 i0 56 1.03809523809524 109 44 100 1 1 315 194 302 MDI9386255.1 protein rep [Spirochaetota bacterium] diamond 327 124 1 Bacteria   Pseudomonadati Spirochaetota         Spirochaetota bacterium
26609671 26609671 PRJNA758770_S_NODE_19501_length_274_cov_1.164179_g19375_i0 PRJNA758770 19501 274 1.164179 3.18985046 uncultured Brachyspira sp. 221953 Bacteria Bacteria 43.1 0.0387   NR WP_295298422.1 221953 g19375 i0 40 0.547445255474453 50 30 54.7 0 48 197 494 543 WP_295298422.1 hypothetical protein [uncultured Brachyspira sp.] diamond 150 43.1 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Brachyspirales Brachyspiraceae Brachyspira uncultured Brachyspira sp.
28831191 28831191 PRJNA758770_S_NODE_25328_length_251_cov_0.876404_g25202_i0 PRJNA758770 25328 251 0.876404 2.19977404 Treponema 157 Bacteria Bacteria 122 7.66e-33   NR NLK61019.1 166 g25202 i0 100 1.38645418326693 58 0 69.3 0 3 176 145 202 NLK61019.1 DNA polymerase III subunit beta [Treponema sp.] diamond 348 122 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema sp.
32739962 32739962 PRJNA758770_S_NODE_17640_length_286_cov_1.042254_g17514_i0 PRJNA758770 17640 286 1.042254 2.98084644 Sphaerochaeta sp. 1972642 Bacteria Bacteria 176 1.25e-51   NR MFA6696656.1 1972642 g17514 i0 100 0.986013986013986 94 0 98.6 0 3 284 180 273 MFA6696656.1 IS110 family transposase [Sphaerochaeta sp.] diamond 282 176 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Sphaerochaetaceae Sphaerochaeta Sphaerochaeta sp.
32802721 32802721 PRJNA758770_S_NODE_25040_length_251_cov_0.876404_g24914_i0 PRJNA758770 25040 251 0.876404 2.19977404 Turneriella sp. 2717305 Bacteria Bacteria 150 1.43e-42   NR MFO1479848.1 2717305 g24914 i0 100 0.99203187250996006 83 0 99.2 0 1 249 150 232 MFO1479848.1 FecR domain-containing protein [Turneriella sp.] diamond 249 150 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Leptospirales Leptospiraceae Turneriella Turneriella sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;