RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA758770" and tax_phylum = "Cyanobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Cyanobacteriota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA758770 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29200658 29200658 PRJNA758770_S_NODE_25029_length_251_cov_0.876404_g24903_i0 PRJNA758770 25029 251 0.876404 2.19977404 Kamptonema cortianum 2922243 Bacteria Bacteria 147 1.35e-40   NR MDK3156905.1 2922243 g24903 i0 85.5 0.99203187250996006 83 12 99.2 0 251 3 116 198 MDK3156905.1 beta-ketoacyl-ACP synthase II [Kamptonema cortianum] diamond 249 147 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Oscillatoriales Microcoleaceae Kamptonema Kamptonema cortianum
30874551 30874551 PRJNA758770_S_NODE_25974_length_250_cov_0.881356_g25848_i0 PRJNA758770 25974 250 0.881356 2.20339 Limnospira platensis 118562 Bacteria Bacteria 107 1e-27   NR MDV7395832.1 3080829 g25848 i0 59.8 0.984 82 33 98.4 0 250 5 1 82 MDV7395832.1 tetratricopeptide repeat protein [Arthrospira platensis SPKY1] diamond 246 107 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Oscillatoriales Sirenicapillariaceae Limnospira Limnospira platensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;