RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA758770", tax_clade = "FCB group" and tax_phylum = "Chlorobiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlorobiota · 2 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 2 ✖

bioproject 1

  • PRJNA758770 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30653231 30653231 PRJNA758770_S_NODE_23753_length_253_cov_0.866667_g23627_i0 PRJNA758770 23753 253 0.866667 2.19266751 Chlorobiota bacterium 2268192 Bacteria Bacteria 132 2.6999999999999995e-38   NR HRK03545.1 2268192 g23627 i0 100 0.723320158102767 61 0 72.3 0 185 3 1 61 HRK03545.1 hypothetical protein [Chlorobiota bacterium] diamond 183 132 1 Bacteria FCB group Pseudomonadati Chlorobiota         Chlorobiota bacterium
31949518 31949518 PRJNA758770_S_NODE_32057_length_243_cov_0.917647_g31931_i0 PRJNA758770 32057 243 0.917647 2.22988221 Chlorobiota bacterium 2268192 Bacteria Bacteria 163 5.67e-46   NR KAA0265163.1 2268192 g31931 i0 97.5 0.987654320987654 80 2 98.8 0 242 3 251 330 KAA0265163.1 MAG: ATP-dependent DNA helicase [Chlorobiota bacterium] diamond 240 163 1 Bacteria FCB group Pseudomonadati Chlorobiota         Chlorobiota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;