RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA758770" and tax_clade = "Amoebozoa"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Amoebozoa · 2 ✖

bioproject 1

  • PRJNA758770 · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
23693390 23693390 PRJNA758770_S_NODE_17279_length_288_cov_1.088372_g17153_i0 PRJNA758770 17279 288 1.088372 3.13451136 Dictyostelium purpureum 5786 Evosea other_Eukaryota 73.1 2.05e-8   NTclustered gi|330796139|ref|XM_003286079.1| 5786 g17153 i0 86.567 0.232638888888889 67 8 23 1 173 238 3375 3309 Dictyostelium purpureum uncharacterized protein (DICPUDRAFT_97284), mRNA blastn 67 73.1 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
27021481 27021481 PRJNA758770_S_NODE_23442_length_253_cov_0.866667_g23316_i0 PRJNA758770 23442 253 0.866667 2.19266751 Pelomyxa schiedti 1580589 Evosea other_Eukaryota 105 4.69e-25   NR KAH3767277.1 1580589 g23316 i0 62.7 4.92094861660079 83 29 98.4 1 251 3 108 188 KAH3767277.1 FAM49 family protein [Pelomyxa schiedti] diamond 1245 105 1 Eukaryota Amoebozoa   Evosea   Pelobiontida Pelomyxidae Pelomyxa Pelomyxa schiedti

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;