RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA758398" and tax_phylum = "Mycoplasmatota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA758398 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16042530 16042530 PRJNA758398_S_NODE_42253_length_167_cov_0.864407_g42112_i0 PRJNA758398 42253 167 0.864407 1.44355969 Spiroplasma litorale 216942 Bacteria Bacteria 52.8 0.014   NTclustered gi|915477727|gb|CP012357.1| 216942 g42112 i0 100 0.167664670658683 28 0 17 0 23 50 657526 657499 Spiroplasma litorale strain TN-1, complete genome blastn 28 52.8 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Entomoplasmatales Spiroplasmataceae Spiroplasma Spiroplasma litorale
27432505 27432505 PRJNA758398_S_NODE_1403_length_761_cov_2.734551_g1296_i0 PRJNA758398 1403 761 2.734551 20.80993311 Mycoplasmataceae bacterium 2685873 Bacteria Bacteria 110 1.36e-23   NR MDR3257779.1 2685873 g1296 i0 47 1.36005256241787 115 59 45.3 1 434 90 108 220 MDR3257779.1 glutamine synthetase III [Mycoplasmataceae bacterium] diamond 1035 110 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae   Mycoplasmataceae bacterium
30906322 30906322 PRJNA758398_S_NODE_36434_length_178_cov_1.581395_g36293_i0 PRJNA758398 36434 178 1.581395 2.8148831 Candidatus Izemoplasmatales bacterium 3018265 Bacteria Bacteria 39.7 0.0227   NR MDD3958231.1 3018265 g36293 i0 72 0.421348314606742 25 7 42.1 0 100 174 4 28 MDD3958231.1 30S ribosomal protein S17 [Candidatus Izemoplasmatales bacterium] diamond 75 39.7 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Candidatus Izemoplasmatales     Candidatus Izemoplasmatales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;