RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA758398" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 7 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA758398 · 7 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14768820 14768820 PRJNA758398_S_NODE_44232_length_166_cov_0.871795_g44091_i0 PRJNA758398 44232 166 0.871795 1.4471797 Bacteria 2 Bacteria Bacteria 99.4 1.2500000000000001e-22   NR MCC6318583.1 2026741 g44091 i0 87.3 1.98795180722892 55 7 99.4 0 2 166 134 188 MCC6318583.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase [Gemmatimonadaceae bacterium] diamond 330 99.8 0.995991983967936 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
30179314 30179314 PRJNA758398_S_NODE_36272_length_179_cov_0.915385_g36131_i0 PRJNA758398 36272 179 0.915385 1.63853915 Longimicrobium sp. 2029185 Bacteria Bacteria 51.6 1.17e-5   NR HEX9936137.1 2029185 g36131 i0 45.3 1.72625698324022 53 25 88.8 2 18 176 564 612 HEX9936137.1 lamin tail domain-containing protein [Longimicrobium sp.] diamond 309 51.6 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.
30684867 30684867 PRJNA758398_S_NODE_52673_length_162_cov_0.902655_g52532_i0 PRJNA758398 52673 162 0.902655 1.4623011 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 52.8 9e-7   NR MBQ35773.1 2026741 g52532 i0 56.4 0.722222222222222 39 15 72.2 1 149 33 72 108 MBQ35773.1 arsenate reductase [Gemmatimonadaceae bacterium] diamond 117 52.8 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
31285262 31285262 PRJNA758398_S_NODE_35115_length_181_cov_1.515152_g34974_i0 PRJNA758398 35115 181 1.515152 2.74242512 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 56.6 2.04e-7   NR MBL8962063.1 2026742 g34974 i0 60 0.994475138121547 60 16 99.4 1 1 180 249 300 MBL8962063.1 S8 family peptidase [Gemmatimonadota bacterium] diamond 180 56.6 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
31706264 31706264 PRJNA758398_S_NODE_22237_length_218_cov_1.201183_g22096_i0 PRJNA758398 22237 218 1.201183 2.61857894 Gemmatimonadota 142182 Bacteria Bacteria 59.7 2.48e-8   NR HKH91170.1 2026741 g22096 i0 53.1 3.56422018348624 64 30 88.1 0 218 27 244 307 HKH91170.1 DUF2382 domain-containing protein [Gemmatimonadaceae bacterium] diamond 777 59.7 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
32044559 32044559 PRJNA758398_S_NODE_27538_length_201_cov_1.006579_g27397_i0 PRJNA758398 27538 201 1.006579 2.02322379 Longimicrobium sp. 2029185 Bacteria Bacteria 90.5 2.82e-19   NR HEX8433437.1 2029185 g27397 i0 74.5 3.04477611940298 51 13 76.1 0 49 201 330 380 HEX8433437.1 phosphoenolpyruvate carboxykinase (ATP) [Longimicrobium sp.] diamond 612 90.5 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.
32582552 32582552 PRJNA758398_S_NODE_53819_length_161_cov_0.910714_g53678_i0 PRJNA758398 53819 161 0.910714 1.46624954 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 50.4 1.15e-5   NR MDX1624763.1 2026742 g53678 i0 48.1 0.968944099378882 52 22 96.9 2 159 4 33 79 MDX1624763.1 GNAT family N-acetyltransferase [Gemmatimonadota bacterium] diamond 156 50.4 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;