RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where bioproject = "PRJNA758088", tax_kingdom = "Fungi" and tax_phylum = "Blastocladiomycota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Blastocladiomycota · 4 ✖

tax_kingdom 1

  • Fungi · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA758088 · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14765816 14765816 PRJNA758088_P_NODE_287672_length_250_cov_1.305085_g280701_i0 PRJNA758088 287672 250 1.305085 3.2627125 Blastocladiella sp. 2169676 Fungi Fungi 185 2.14e-42   NTclustered gi|1866582610|gb|MT730785.1| 2169676 g280701 i0 85.027 56.412 187 23 74 4 67 250 3981 3797 Blastocladiella sp. isolate JEL0703 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 14103 185 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Blastocladiaceae Blastocladiella Blastocladiella sp.
17313150 17313150 PRJNA758088_P_NODE_164794_length_329_cov_2.953125_g157823_i0 PRJNA758088 164794 329 2.953125 9.71578125 Fungi 4751 Fungi Fungi 114 3.5499999999999996e-30   NR KAI9221418.1 64508 g157823 i0 61.1 5.04255319148936 90 35 82.1 0 271 2 14 103 KAI9221418.1 60S ribosomal protein L30 [Blastocladiella britannica] diamond 1659 115 0.991304347826087 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Blastocladiaceae Blastocladiella Blastocladiella britannica
30031242 30031242 PRJNA758088_P_NODE_158611_length_335_cov_1.591603_g151640_i0 PRJNA758088 158611 335 1.591603 5.33187005 Fungi 4751 Fungi Fungi 130 5.04e-36   NR KAI9216707.1 64508 g151640 i0 65.2 44.3283582089552 89 31 79.7 0 334 68 60 148 KAI9216707.1 ubiquitin-conjugating enzyme [Blastocladiella britannica] diamond 14850 130 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Blastocladiaceae Blastocladiella Blastocladiella britannica
32644942 32644942 PRJNA758088_P_NODE_191580_length_307_cov_1.316239_g184609_i0 PRJNA758088 191580 307 1.316239 4.04085373 Paraphysoderma sedebokerense 1500003 Fungi Fungi 94.7 9.63e-22   NR KAI9144735.1 1500003 g184609 i0 50.5 4.95439739413681 99 47 94.8 2 17 307 35 133 KAI9144735.1 ras family-domain-containing protein [Paraphysoderma sedebokerense] diamond 1521 94.7 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Physodermatomycetes Physodermatales Physodermataceae Paraphysoderma Paraphysoderma sedebokerense

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;