RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA758088" and tax_clade = "sulfur-oxidizing symbionts"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • sulfur-oxidizing symbionts · 2 ✖

bioproject 1

  • PRJNA758088 · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18586837 18586837 PRJNA758088_P_NODE_165115_length_329_cov_1.503906_g158144_i0 PRJNA758088 165115 329 1.503906 4.94785074 Bathymodiolus thermophilus thioautotrophic gill symbiont 2360 Bacteria Bacteria 52.8 0.031   NTclustered gi|1509233682|gb|CP024634.1| 2360 g158144 i0 100 0.0851063829787234 28 0 9 0 261 288 1316167 1316194 Bathymodiolus thermophilus thioautotrophic gill symbiont strain EPR9N chromosome, complete genome blastn 28 52.8 1 Bacteria sulfur-oxidizing symbionts Pseudomonadati Pseudomonadota Gammaproteobacteria       Bathymodiolus thermophilus thioautotrophic gill symbiont
27811298 27811298 PRJNA758088_P_NODE_242744_length_273_cov_1.220000_g235773_i0 PRJNA758088 242744 273 1.22 3.3306 Solemya velum gill symbiont 2340 Bacteria Bacteria 55.1 2.42e-6   NR WP_144078555.1 2340 g235773 i0 59 4.28571428571429 39 16 42.9 0 157 273 394 432 WP_144078555.1 hypothetical protein, partial [Solemya velum gill symbiont] diamond 1170 55.1 1 Bacteria sulfur-oxidizing symbionts Pseudomonadati Pseudomonadota Gammaproteobacteria       Solemya velum gill symbiont

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;