RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA758088", tax_clade = "PVC group" and tax_phylum = "Chlamydiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 4 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 4 ✖

bioproject 1

  • PRJNA758088 · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2011009 2011009 PRJNA758088_P_NODE_16022_length_1293_cov_4.721311_g12286_i0 PRJNA758088 16022 1293 4.721311 61.04655123 uncultured Parachlamydiaceae bacterium 464461 Bacteria Bacteria 1740 0   NTclustered gi|2874253811|emb|OY969795.1| 464461 g12286 i0 91.007 173.973704563032 1301 102 100 14 1 1293 655237 653944 MAG: uncultured Parachlamydiaceae bacterium isolate MFD05502.bin.c.3 genome assembly, chromosome: 1 blastn 224948 1740 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   uncultured Parachlamydiaceae bacterium
27400782 27400782 PRJNA758088_P_NODE_355343_length_242_cov_0.911243_g348372_i0 PRJNA758088 355343 242 0.911243 2.20520806 Candidatus Protochlamydia naegleriophila 389348 Bacteria Bacteria 111 9.51e-28   NR WP_059059684.1 389348 g348372 i0 71.6 1.84710743801653 81 22 99.2 1 1 240 136 216 WP_059059684.1 hypothetical protein [Candidatus Protochlamydia naegleriophila] diamond 447 111 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia naegleriophila
29452660 29452660 PRJNA758088_P_NODE_358530_length_242_cov_0.911243_g351559_i0 PRJNA758088 358530 242 0.911243 2.20520806 Chlamydia trachomatis 813 Bacteria Bacteria 128 3.95e-33   NR CRH84917.1 813 g351559 i0 78.8 0.991735537190083 80 17 99.2 0 2 241 358 437 CRH84917.1 Uncharacterised protein [Chlamydia trachomatis] diamond 240 128 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia trachomatis
29452662 29452662 PRJNA758088_P_NODE_85930_length_455_cov_6.282723_g78961_i0 PRJNA758088 85930 455 6.282723 28.58638965 Chlamydiales bacterium 2047757 Bacteria Bacteria 136 1.0799999999999998e-37   NR MCP5470421.1 2047757 g78961 i0 51.7 4.22637362637363 143 63 93 2 453 31 19 157 MCP5470421.1 hypothetical protein [Chlamydiales bacterium] diamond 1923 136 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;