RNAquarium Metadata Server
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contig_metadata

8 rows where bioproject = "PRJNA758088", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 8 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 8 ✖

bioproject 1

  • PRJNA758088 · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
21605923 21605923 PRJNA758088_P_NODE_313657_length_247_cov_0.885057_g306686_i0 PRJNA758088 313657 247 0.885057 2.18609079 Gemmatimonas groenlandica 2732249 Bacteria Bacteria 152 2.959999999999999e-43   NR WP_171224192.1 2732249 g306686 i0 92.6 0.983805668016194 81 6 98.4 0 245 3 177 257 WP_171224192.1 ABC transporter permease [Gemmatimonas groenlandica] diamond 243 152 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas groenlandica
21606009 21606009 PRJNA758088_P_NODE_338177_length_244_cov_0.900585_g331206_i0 PRJNA758088 338177 244 0.900585 2.1974274 Roseisolibacter sp. H3M3-2 3031323 Bacteria Bacteria 67 9.48e-11   NR WP_275831779.1 3031323 g331206 i0 61.9 0.774590163934426 63 23 77.5 1 3 191 174 235 WP_275831779.1 protein phosphatase 2C domain-containing protein, partial [Roseisolibacter sp. H3M3-2] diamond 189 67 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Roseisolibacter Roseisolibacter sp. H3M3-2
22881331 22881331 PRJNA758088_P_NODE_304498_length_248_cov_0.880000_g297527_i0 PRJNA758088 304498 248 0.88 2.1824 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 142 3.86e-38   NR HEY7612641.1 2448054 g297527 i0 90.1 3.87096774193548 81 8 98 0 245 3 27 107 HEY7612641.1 glycoside hydrolase family 3 N-terminal domain-containing protein [Gemmatimonadales bacterium] diamond 960 142 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
24964477 24964477 PRJNA758088_P_NODE_358420_length_242_cov_0.911243_g351449_i0 PRJNA758088 358420 242 0.911243 2.20520806 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 52.8 0.022   NTclustered gi|575456455|gb|CP007128.1| 861299 g351449 i0 100 0.115702479338843 28 0 12 0 91 118 4826243 4826216 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 28 52.8 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
28979517 28979517 PRJNA758088_P_NODE_301148_length_249_cov_0.875000_g294177_i0 PRJNA758088 301148 249 0.875 2.17875 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 122 9.52e-32   NR MBA3319176.1 2448054 g294177 i0 87 0.831325301204819 69 9 83.1 0 2 208 258 326 MBA3319176.1 ATP-grasp domain-containing protein [Gemmatimonadales bacterium] diamond 207 122 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
31348704 31348704 PRJNA758088_P_NODE_349956_length_243_cov_0.905882_g342985_i0 PRJNA758088 349956 243 0.905882 2.20129326 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 82 5.5e-16   NR MDH3456211.1 2026742 g342985 i0 57.7 0.962962962962963 78 33 96.3 0 241 8 557 634 MDH3456211.1 hypothetical protein [Gemmatimonadota bacterium] diamond 234 82 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
31886207 31886207 PRJNA758088_P_NODE_333417_length_245_cov_0.895349_g326446_i0 PRJNA758088 333417 245 0.895349 2.19360505 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 127 1.75e-34   NR HKH90446.1 2026741 g326446 i0 74.7 0.96734693877551 79 20 96.7 0 1 237 142 220 HKH90446.1 DUF2306 domain-containing protein [Gemmatimonadaceae bacterium] diamond 237 127 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
32139446 32139446 PRJNA758088_P_NODE_300038_length_249_cov_0.875000_g293067_i0 PRJNA758088 300038 249 0.875 2.17875 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 43.5 0.0197   NR HEY7896443.1 2026741 g293067 i0 50 0.72289156626506 60 25 71.1 2 50 226 128 183 HEY7896443.1 cytochrome c oxidase assembly protein [Gemmatimonadaceae bacterium] diamond 180 43.5 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;