RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

7 rows where bioproject = "PRJNA758088", tax_clade = "Discoba" and tax_phylum = "Heterolobosea"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 7 ✖

tax_clade 1

  • Discoba · 7 ✖

bioproject 1

  • PRJNA758088 · 7 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7116872 7116872 PRJNA758088_P_NODE_370426_length_201_cov_8.640625_g363455_i0 PRJNA758088 370426 201 8.640625 17.36765625 Naegleria fowleri 5763 Heterolobosea other_Eukaryota 333 5.569999999999999e-87   NTclustered gi|2031941787|emb|OD957980.1| 5763 g363455 i0 96.517 1.91542288557214 201 7 100 0 1 201 215 15 Naegleria fowleri Karachi_NF001 strain blastn 385 333 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
24961493 24961493 PRJNA758088_P_NODE_158700_length_335_cov_1.465649_g151729_i0 PRJNA758088 158700 335 1.465649 4.90992415 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 547 3.3099999999999984e-151   NTclustered gi|290993541|ref|XM_002679346.1| 5762 g151729 i0 96.119 54.0328358208955 335 13 100 0 1 335 911 577 Naegleria gruberi uncharacterized protein (NAEGRDRAFT_36068), mRNA blastn 18101 547 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
28484019 28484019 PRJNA758088_P_NODE_237766_length_276_cov_1.305419_g230795_i0 PRJNA758088 237766 276 1.305419 3.60295644 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 120 1.08e-29   NR XP_002682064.1 5762 g230795 i0 62 3 92 35 100 0 1 276 198 289 XP_002682064.1 ammonium transporter AmtA [Naegleria gruberi] diamond 828 120 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
29074257 29074257 PRJNA758088_P_NODE_103288_length_412_cov_4.926254_g96318_i0 PRJNA758088 103288 412 4.926254 20.29616648 Naegleria fowleri 5763 Heterolobosea other_Eukaryota 75.9 5.91e-15   NR XP_044563804.1 5763 g96318 i0 47.5 0.58252427184466 80 42 58.3 0 128 367 12 91 XP_044563804.1 uncharacterized protein FDP41_002161 [Naegleria fowleri] diamond 240 75.9 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
29683441 29683441 PRJNA758088_P_NODE_281790_length_251_cov_0.865169_g274819_i0 PRJNA758088 281790 251 0.865169 2.17157419 Naegleria 5761 Heterolobosea other_Eukaryota 108 2.86e-28   NR XP_002676892.1 5762 g274819 i0 61.4 3.95617529880478 83 32 99.2 0 3 251 55 137 XP_002676892.1 uncharacterized protein NAEGRDRAFT_33801, partial [Naegleria gruberi] diamond 993 108 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
31854558 31854558 PRJNA758088_P_NODE_246937_length_270_cov_1.964467_g239966_i0 PRJNA758088 246937 270 1.964467 5.3040609 Acrasis kona 1008807 Heterolobosea other_Eukaryota 115 5.12e-30   NR KAL0476827.1 1008807 g239966 i0 81.4 0.777777777777778 70 13 77.8 0 214 5 1 70 KAL0476827.1 ribosomal protein S7 [Acrasis kona] diamond 210 115 1 Eukaryota Discoba   Heterolobosea     Acrasidae Acrasis Acrasis kona
32012854 32012854 PRJNA758088_P_NODE_260798_length_262_cov_1.343915_g253827_i0 PRJNA758088 260798 262 1.343915 3.5210573 Naegleria lovaniensis 51637 Heterolobosea other_Eukaryota 94.7 1.64e-20   NR XP_044545782.1 51637 g253827 i0 53.7 0.938931297709924 82 38 93.9 0 3 248 169 250 XP_044545782.1 uncharacterized protein C9374_008159 [Naegleria lovaniensis] diamond 246 94.7 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria lovaniensis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;