RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA758088", tax_clade = "CRuMs" and tax_superkingdom = "Eukaryota"

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tax_superkingdom 1

  • Eukaryota · 3 ✖

tax_clade 1

  • CRuMs · 3 ✖

bioproject 1

  • PRJNA758088 · 3 ✖

analysis 1

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12217746 12217746 PRJNA758088_P_NODE_37770_length_755_cov_4.683284_g31531_i0 PRJNA758088 37770 755 4.683284 35.3587942 Diphylleia rotans 190327 Root_unresolved Root_unresolved 1363 0   NTclustered gi|1200177731|gb|MF039365.1| 190327 g31531 i0 99.338 27.3933774834437 755 2 100 3 1 755 5058 4307 Diphylleia rotans isolate D_NIES3764 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 20682 1363 1 Eukaryota CRuMs         Collodictyonidae Diphylleia Diphylleia rotans
13487965 13487965 PRJNA758088_P_NODE_11051_length_1571_cov_37.732310_g8318_i0 PRJNA758088 11051 1571 37.73231 592.7745901 Diphylleia rotans 190327 Root_unresolved Root_unresolved 2774 0   NTclustered gi|1200177731|gb|MF039365.1| 190327 g8318 i0 99.096 32.8192234245703 1549 5 98 7 29 1571 2148 3693 Diphylleia rotans isolate D_NIES3764 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 51559 2774 1 Eukaryota CRuMs         Collodictyonidae Diphylleia Diphylleia rotans
14768185 14768185 PRJNA758088_P_NODE_91492_length_440_cov_1.841962_g84522_i0 PRJNA758088 91492 440 1.841962 8.1046328 Diphylleia rotans 190327 Root_unresolved Root_unresolved 813 0   NTclustered gi|1016881912|ref|NC_029886.1| 190327 g84522 i0 100 23.5977272727273 440 0 100 0 1 440 45437 45876 Diphylleia rotans isolate NIES-3764 mitochondrion, complete genome blastn 10383 813 1 Eukaryota CRuMs         Collodictyonidae Diphylleia Diphylleia rotans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;