RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA758088", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Saccharimonadota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Candidatus Saccharimonadota · 6 ✖

tax_clade 1

  • Bacteria candidate phyla · 6 ✖

bioproject 1

  • PRJNA758088 · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4565663 4565663 PRJNA758088_P_NODE_314564_length_247_cov_0.885057_g307593_i0 PRJNA758088 314564 247 0.885057 2.18609079 Candidatus Saccharimonadota bacterium 2026720 Bacteria Bacteria 412 8.89e-111   NTclustered gi|1950821269|gb|CP066696.1| 2026720 g307593 i0 96.761 97.7813765182186 247 8 100 0 1 247 798196 798442 Candidatus Saccharibacteria bacterium isolate NC_groundwater_1927_Pr3_S-0.2um_48_6 chromosome blastn 24152 412 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharimonadota bacterium
4566061 4566061 PRJNA758088_P_NODE_340724_length_244_cov_0.900585_g333753_i0 PRJNA758088 340724 244 0.900585 2.1974274 Candidatus Nanogingivalaceae bacterium 2725942 Bacteria Bacteria 424 4.05e-114   NTclustered gi|2070571752|gb|CP072208.2| 2725942 g333753 i0 97.951 2 244 5 100 0 1 244 119105 119348 MAG: Candidatus Nanogingivalaceae bacterium isolate JCVI_27_bin.3 chromosome, complete genome blastn 488 424 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota Candidatus Nanosyncoccalia Candidatus Nanogingivales Candidatus Nanogingivalaceae   Candidatus Nanogingivalaceae bacterium
26926441 26926441 PRJNA758088_P_NODE_313822_length_247_cov_0.885057_g306851_i0 PRJNA758088 313822 247 0.885057 2.18609079 TM7 phylum sp. oral taxon 35 713052 Bacteria Bacteria 160 6.55e-47   NR TWP08780.1 713052 g306851 i0 100 0.995951417004049 82 0 99.6 0 246 1 174 255 TWP08780.1 triose-phosphate isomerase [TM7 phylum sp. oral taxon 350] diamond 246 160 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         TM7 phylum sp. oral taxon 350
27147390 27147390 PRJNA758088_P_NODE_353962_length_242_cov_0.911243_g346991_i0 PRJNA758088 353962 242 0.911243 2.20520806 Candidatus Saccharimonadales bacterium 2973664 Bacteria Bacteria 100 2.14e-22   NR HET6746543.1 2973664 g346991 i0 59.3 4.01652892561984 81 32 99.2 1 3 242 70 150 HET6746543.1 hypothetical protein [Candidatus Saccharimonadales bacterium] diamond 972 100 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota Candidatus Saccharimonadia Candidatus Saccharimonadales     Candidatus Saccharimonadales bacterium
28632263 28632263 PRJNA758088_P_NODE_340947_length_244_cov_0.900585_g333976_i0 PRJNA758088 340947 244 0.900585 2.1974274 Candidatus Saccharimonadota bacterium 2026720 Bacteria Bacteria 145 1.4e-39   NR MBR3204498.1 2026720 g333976 i0 95 1.9672131147541 80 4 98.4 0 242 3 236 315 MBR3204498.1 GIY-YIG nuclease family protein [Candidatus Saccharibacteria bacterium] diamond 480 145 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharimonadota bacterium
31538530 31538530 PRJNA758088_P_NODE_350536_length_243_cov_0.905882_g343565_i0 PRJNA758088 350536 243 0.905882 2.20129326 Candidatus Saccharimonadota bacterium 2026720 Bacteria Bacteria 99 4.4e-22   NR MBM3210273.1 2026720 g343565 i0 62 0.975308641975309 79 30 97.5 0 4 240 112 190 MBM3210273.1 ABC transporter permease [Candidatus Saccharibacteria bacterium] diamond 237 99 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharimonadota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;