RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

30 rows where bioproject = "PRJNA758088" and tax_clade = "Amoebozoa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 2

analysis 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 30 ✖

bioproject 1

  • PRJNA758088 · 30 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2010645 2010645 PRJNA758088_P_NODE_138622_length_357_cov_1.507042_g131651_i0 PRJNA758088 138622 357 1.507042 5.38013994 Heterostelium pallidum 13642 Evosea other_Eukaryota 135 3.2600000000000004e-27   NTclustered gi|60117108|ref|NC_006862.1| 13642 g131651 i0 76.066 8.42296918767507 305 48 80 23 31 317 177 474 Polysphondylium pallidum mitochondrion, complete genome blastn 3007 135 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium pallidum
4564711 4564711 PRJNA758088_P_NODE_247644_length_270_cov_1.263959_g240673_i0 PRJNA758088 247644 270 1.263959 3.4126893 Vannella septentrionalis 197531 Discosea other_Eukaryota 357 4.6799999999999997e-94   NTclustered gi|300078499|gb|GU001161.1| 197531 g240673 i0 98.068 34.6962962962963 207 1 100 1 1 204 2663 2869 Vannella septentrionalis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 9368 357 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella septentrionalis
5841589 5841589 PRJNA758088_P_NODE_366225_length_241_cov_0.916667_g359254_i0 PRJNA758088 366225 241 0.916667 2.20916747 Amoebozoa sp. 1892891 Root_unresolved Root_unresolved 196 9.47e-46   NTclustered gi|2651357787|gb|PP174302.1| 1892891 g359254 i0 82.231 9.00829875518672 242 30 100 10 1 241 4043 3814 Amoebozoa sp. isolate 2M small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 2171 196 1 Eukaryota Amoebozoa             Amoebozoa sp.
7116430 7116430 PRJNA758088_P_NODE_340386_length_244_cov_0.900585_g333415_i0 PRJNA758088 340386 244 0.900585 2.1974274 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 429 8.699999999999998e-116   NTclustered gi|470527052|ref|XM_004356913.1| 1257118 g333415 i0 98.361 2.29098360655738 244 4 100 0 1 244 459 216 Acanthamoeba castellanii str. Neff ubiquitin-conjugating enzyme, putative (ACA1_321320), partial mRNA blastn 559 429 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
9665990 9665990 PRJNA758088_P_NODE_332708_length_245_cov_0.895349_g325737_i0 PRJNA758088 332708 245 0.895349 2.19360505 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 171 5.85e-38   NTclustered gi|470455615|ref|XM_004340928.1| 1257118 g325737 i0 84.795 62.0448979591837 171 24 69 2 75 244 109 278 Acanthamoeba castellanii str. Neff ribosomal protein S23 (S12), putative (ACA1_232480), partial mRNA blastn 15201 171 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
12217093 12217093 PRJNA758088_P_NODE_328370_length_245_cov_1.250000_g321399_i0 PRJNA758088 328370 245 1.25 3.0625 Vannella sp. strain 4354/I 325074 Discosea other_Eukaryota 453 5.1900000000000006e-123   NTclustered gi|62865936|gb|AY929911.1| 325074 g321399 i0 100 98.3020408163265 245 0 100 0 1 245 155 399 Vannella sp. strain 4354/I 18S small subunit ribosomal RNA gene, partial sequence blastn 24084 453 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella sp. strain 4354/I
13490701 13490701 PRJNA758088_P_NODE_290731_length_250_cov_0.870056_g283760_i0 PRJNA758088 290731 250 0.870056 2.17514 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 142 6.52e-41   NR XP_004334642.1 1257118 g283760 i0 94.5 0.876 73 4 87.6 0 2 220 9 81 XP_004334642.1 Ras family GTPase [Acanthamoeba castellanii str. Neff] diamond 219 142 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
16040058 16040058 PRJNA758088_P_NODE_321973_length_246_cov_0.890173_g315002_i0 PRJNA758088 321973 246 0.890173 2.18982558 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 307 4.2900000000000005e-79   NTclustered gi|470493585|ref|XM_004346477.1| 1257118 g315002 i0 89.344 0.991869918699187 244 26 99 0 1 244 142 385 Acanthamoeba castellanii str. Neff PhoPQactivated pathogenicity-related protein-like protein, putative (ACA1_227830), partial mRNA blastn 244 307 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
16041973 16041973 PRJNA758088_P_NODE_96233_length_428_cov_1.743662_g89263_i0 PRJNA758088 96233 428 1.743662 7.46287336 Cochliopodium kieliense 1512276 Discosea other_Eukaryota 536 9.349999999999999e-148   NTclustered gi|659103926|gb|KJ569726.1| 1512276 g89263 i0 95.322 35.446261682243 342 9 96 7 1 336 344 4 Cochliopodium kieliense clone 9605 18S ribosomal RNA gene, partial sequence blastn 15171 536 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium kieliense
17313923 17313923 PRJNA758088_P_NODE_215294_length_290_cov_1.419355_g208323_i0 PRJNA758088 215294 290 1.419355 4.1161295 Acytostelium leptosomum 133408 Evosea other_Eukaryota 503 6.17e-138   NTclustered gi|1057487862|gb|KX539491.1| 133408 g208323 i0 97.931 109.71724137931 290 6 100 0 1 290 2936 2647 Acytostelium leptosomum strain FG12A dihydrolipoamide acetyltransferase (pdhC) gene, complete cds blastn 31818 503 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium leptosomum
19864521 19864521 PRJNA758088_P_NODE_335796_length_244_cov_1.497076_g328825_i0 PRJNA758088 335796 244 1.497076 3.65286544 Acytostelium leptosomum 133408 Evosea other_Eukaryota 435 1.87e-117   NTclustered gi|1057487862|gb|KX539491.1| 133408 g328825 i0 98.77 102.27868852459 244 3 100 0 1 244 3193 2950 Acytostelium leptosomum strain FG12A dihydrolipoamide acetyltransferase (pdhC) gene, complete cds blastn 24956 435 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium leptosomum
21139376 21139376 PRJNA758088_P_NODE_284837_length_251_cov_0.865169_g277866_i0 PRJNA758088 284837 251 0.865169 2.17157419 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 141 1.62e-37   NR PRP88780.1 1890364 g277866 i0 77.1 4.9601593625498 83 19 99.2 0 2 250 300 382 PRP88780.1 citrate synthase, mitochondrial [Planoprotostelium fungivorum] diamond 1245 141 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
21139721 21139721 PRJNA758088_P_NODE_307277_length_248_cov_0.880000_g300306_i0 PRJNA758088 307277 248 0.88 2.1824 Acytostelium subglobosum 361139 Evosea other_Eukaryota 87.9 6.15e-13   NTclustered gi|831761070|ref|XM_012894692.1| 1410327 g300306 i0 94.737 3.01209677419355 57 1 23 2 17 73 343 397 Acytostelium subglobosum LB1 hypothetical protein partial mRNA blastn 747 87.9 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium subglobosum
26609564 26609564 PRJNA758088_P_NODE_153801_length_340_cov_1.213483_g146830_i0 PRJNA758088 153801 340 1.213483 4.1258422 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 152 2.74e-41   NR PRP74799.1 1890364 g146830 i0 58.4 0.997058823529412 113 47 99.7 0 340 2 336 448 PRP74799.1 actin binding protein [Planoprotostelium fungivorum] diamond 339 152 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
27400776 27400776 PRJNA758088_P_NODE_329203_length_245_cov_0.895349_g322232_i0 PRJNA758088 329203 245 0.895349 2.19360505 Pelomyxa schiedti 1580589 Evosea other_Eukaryota 95.9 7.720000000000001e-21   NR KAH3758226.1 1580589 g322232 i0 54.5 0.942857142857143 77 35 94.3 0 244 14 1394 1470 KAH3758226.1 Ubiquitinconjugating enzyme subfamily protein [Pelomyxa schiedti] diamond 231 95.9 1 Eukaryota Amoebozoa   Evosea   Pelobiontida Pelomyxidae Pelomyxa Pelomyxa schiedti
27495460 27495460 PRJNA758088_P_NODE_359283_length_242_cov_0.893491_g352312_i0 PRJNA758088 359283 242 0.893491 2.16224822 Pelomyxa schiedti 1580589 Evosea other_Eukaryota 55.1 1.58e-6   NR KAH3742752.1 1580589 g352312 i0 36.1 2.62809917355372 72 41 84.3 2 229 26 84 154 KAH3742752.1 hypothetical protein Pelo_15849 [Pelomyxa schiedti] diamond 636 55.1 1 Eukaryota Amoebozoa   Evosea   Pelobiontida Pelomyxidae Pelomyxa Pelomyxa schiedti
27526906 27526906 PRJNA758088_P_NODE_289203_length_250_cov_0.870056_g282232_i0 PRJNA758088 289203 250 0.870056 2.17514 Dictyostelium discoideum AX4 352472 Evosea other_Eukaryota 67.8 5.71e-11   NR XP_002649142.1 352472 g282232 i0 47.9 0.852 71 37 85.2 0 218 6 211 281 XP_002649142.1 mandelate racemase/muconate lactonizing enzyme domain-containing protein [Dictyostelium discoideum AX4] diamond 213 67.8 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
27590287 27590287 PRJNA758088_P_NODE_329404_length_245_cov_0.895349_g322433_i0 PRJNA758088 329404 245 0.895349 2.19360505 Cavenderia fasciculata 261658 Evosea other_Eukaryota 83.2 2.04e-16   NR XP_004359611.1 261658 g322433 i0 46.9 0.991836734693878 81 41 99.2 1 2 244 249 327 XP_004359611.1 Hypothetical protein yfeW precursor [Cavenderia fasciculata] diamond 243 83.2 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Cavenderiaceae Cavenderia Cavenderia fasciculata
27685132 27685132 PRJNA758088_P_NODE_319284_length_246_cov_1.780347_g312313_i0 PRJNA758088 319284 246 1.780347 4.37965362 Dictyostelium discoideum AX4 352472 Evosea other_Eukaryota 90.9 3.74e-19   NR XP_644880.1 352472 g312313 i0 46.3 0.975609756097561 80 43 97.6 0 244 5 385 464 XP_644880.1 hypothetical protein DDB_G0272917 [Dictyostelium discoideum AX4] diamond 240 90.9 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
28032231 28032231 PRJNA758088_P_NODE_179405_length_317_cov_0.991803_g172434_i0 PRJNA758088 179405 317 0.991803 3.14401551 Dictyostelium purpureum 5786 Evosea other_Eukaryota 61.2 1.42e-9   NR XP_003289470.1 5786 g172434 i0 38.6 0.832807570977918 88 52 81.4 2 308 51 14 101 XP_003289470.1 uncharacterized protein DICPUDRAFT_98373 [Dictyostelium purpureum] diamond 264 61.2 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
28189758 28189758 PRJNA758088_P_NODE_240946_length_274_cov_1.398010_g233975_i0 PRJNA758088 240946 274 1.39801 3.8305474 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 63.9 1.94e-9   NR PRP77715.1 1890364 g233975 i0 46.7 4.94890510948905 75 38 81 2 1 222 118 191 PRP77715.1 ABC transporter D family protein [Planoprotostelium fungivorum] diamond 1356 63.9 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
28600586 28600586 PRJNA758088_P_NODE_348227_length_243_cov_0.905882_g341256_i0 PRJNA758088 348227 243 0.905882 2.20129326 Vannella simplex 197532 Discosea other_Eukaryota 129 1.3599999999999998e-35   NR AUO29166.1 197532 g341256 i0 98.8 0.987654320987654 80 1 98.8 0 3 242 18 97 AUO29166.1 NADH dehydrogenase subunit 6 [Vannella simplex] diamond 240 129 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella simplex
29105804 29105804 PRJNA758088_P_NODE_263228_length_261_cov_0.984043_g256257_i0 PRJNA758088 263228 261 0.984043 2.56835223 Acytostelium subglobosum LB1 1410327 Evosea other_Eukaryota 42.7 0.0451   NR XP_012754893.1 1410327 g256257 i0 31.1 0.850574712643678 74 51 85.1 0 2 223 145 218 XP_012754893.1 hypothetical protein SAMD00019534_049680 [Acytostelium subglobosum LB1] diamond 222 42.7 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium subglobosum
29368100 29368100 PRJNA758088_P_NODE_125269_length_375_cov_1.317881_g118298_i0 PRJNA758088 125269 375 1.317881 4.94205375 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 48.5 3.01e-4   NR XP_001134562.1 352472 g118298 i0 30.9 4.176 94 57 71.2 2 286 20 32 122 XP_001134562.1 transmembrane protein [Dictyostelium discoideum AX4] diamond 1566 48.5 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
30306234 30306234 PRJNA758088_P_NODE_309412_length_248_cov_0.880000_g302441_i0 PRJNA758088 309412 248 0.88 2.1824 Heterostelium album PN5 2086695 Evosea other_Eukaryota 42.7 0.0401   NR XP_020437994.1 670386 g302441 i0 30.4 0.834677419354839 69 46 81 1 209 9 677 745 XP_020437994.1 transportin [Heterostelium album PN500] diamond 207 42.7 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album
30874466 30874466 PRJNA758088_P_NODE_67014_length_526_cov_1.417219_g60072_i0 PRJNA758088 67014 526 1.417219 7.45457194 Entamoeba invadens IP1 370355 Evosea other_Eukaryota 47.4 0.0124   NR XP_004182973.1 370355 g60072 i0 55.8 0.490494296577947 43 16 22.8 1 46 165 59 101 XP_004182973.1 hypothetical protein EIN_417160, partial [Entamoeba invadens IP1] diamond 258 47.4 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba invadens
31316930 31316930 PRJNA758088_P_NODE_342615_length_244_cov_0.900585_g335644_i0 PRJNA758088 342615 244 0.900585 2.1974274 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 48.5 1.2e-4   NR XP_004357155.1 1257118 g335644 i0 43.3 0.737704918032787 60 34 73.8 0 58 237 88 147 XP_004357155.1 ankyrin repeat-containing protein [Acanthamoeba castellanii str. Neff] diamond 180 48.5 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
31959283 31959283 PRJNA758088_P_NODE_269517_length_257_cov_1.255435_g262546_i0 PRJNA758088 269517 257 1.255435 3.22646795 root 1 Root_unresolved Root_unresolved 121 1.85e-32   NR XP_004340539.1 1257118 g262546 i0 70.2 1.96108949416342 84 25 98.1 0 257 6 74 157 XP_004340539.1 Ras GTPase rap1b, putative [Acanthamoeba castellanii str. Neff] diamond 504 121 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
32244456 32244456 PRJNA758088_P_NODE_326218_length_246_cov_0.890173_g319247_i0 PRJNA758088 326218 246 0.890173 2.18982558 Dictyostelium 5782 Evosea other_Eukaryota 82 1.08e-16   NR XP_003294366.1 5786 g319247 i0 55.7 1.89024390243902 79 35 96.3 0 242 6 110 188 XP_003294366.1 uncharacterized protein DICPUDRAFT_43294 [Dictyostelium purpureum] diamond 465 82 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
32266237 32266237 PRJNA758088_P_NODE_314798_length_247_cov_0.885057_g307827_i0 PRJNA758088 314798 247 0.885057 2.18609079 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 75.9 8.43e-14   NR XP_004356508.1 1257118 g307827 i0 64.9 4.55465587044534 57 20 69.2 0 172 2 132 188 XP_004356508.1 uncharacterized protein ACA1_171920 [Acanthamoeba castellanii str. Neff] diamond 1125 75.9 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;