RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA758087" and tax_kingdom = "Shotokuvirae"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Shotokuvirae · 3 ✖

bioproject 1

  • PRJNA758087 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13487524 13487524 PRJNA758087_P_NODE_40031_length_272_cov_1.381910_g38711_i0 PRJNA758087 40031 272 1.38191 3.7587952 Erythroparvovirus ungulate1 3052194 Viruses Viruses 492 1.24e-134   NTclustered gi|2500352099|ref|NC_074970.1| 172297 g38711 i0 99.265 8.42647058823529 272 2 100 0 1 272 680 951 Bovine parvovirus 3 putative non-structural protein and putative capsid protein genes, complete cds blastn 2292 492 1 Viruses   Shotokuvirae Cossaviricota Quintoviricetes Piccovirales Parvoviridae Erythroparvovirus Erythroparvovirus ungulate1
14762421 14762421 PRJNA758087_P_NODE_29032_length_428_cov_1.084507_g27712_i0 PRJNA758087 29032 428 1.084507 4.64168996 Parvovirus macaca3116 3117124 Viruses Viruses 52.8 0.041   NTclustered gi|2710391813|tpg|BK066549.1| 3117124 g27712 i0 100 0.0654205607476635 28 0 7 0 1 28 2 29 MAG TPA_asm: Parvovirus macaca3116 isolate Parvo3116 genomic sequence blastn 28 52.8 1 Viruses   Shotokuvirae Cossaviricota Quintoviricetes Piccovirales Parvoviridae   Parvovirus macaca3116
23686635 23686635 PRJNA758087_P_NODE_34479_length_344_cov_1.132841_g33159_i0 PRJNA758087 34479 344 1.132841 3.8969730400000002 Parvovirus macaca3116 3117124 Viruses Viruses 52.8 0.033   NTclustered gi|2710391813|tpg|BK066549.1| 3117124 g33159 i0 100 0.0813953488372093 28 0 8 0 316 343 3089 3116 MAG TPA_asm: Parvovirus macaca3116 isolate Parvo3116 genomic sequence blastn 28 52.8 1 Viruses   Shotokuvirae Cossaviricota Quintoviricetes Piccovirales Parvoviridae   Parvovirus macaca3116

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;