RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA758087", tax_kingdom = "Pseudomonadati" and tax_phylum = "Thermodesulfobacteriota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 4 ✖

tax_kingdom 1

  • Pseudomonadati · 4 ✖

bioproject 1

  • PRJNA758087 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
23686326 23686326 PRJNA758087_P_NODE_23359_length_536_cov_35.516199_g22041_i0 PRJNA758087 23359 536 35.516199 190.36682664 Thermodesulfobacteriota bacterium 2202153 Bacteria Bacteria 392 2.7299999999999995e-104   NTclustered gi|2575803239|emb|OY729416.1| 2202153 g22041 i0 82.646 84.4048507462687 461 62 85 13 49 504 75651 75204 MAG: Thermodesulfobacteriota bacterium isolate ba02c5ff-97d3-4768-ae28-618c4039653d genome assembly, chromosome: 1 blastn 45241 392 1 Bacteria   Pseudomonadati Thermodesulfobacteriota         Thermodesulfobacteriota bacterium
26831488 26831488 PRJNA758087_P_NODE_14881_length_771_cov_10.467049_g13651_i0 PRJNA758087 14881 771 10.467049 80.70094779 Candidatus Dadabacteria bacterium 2080303 Bacteria Bacteria 154 4.9199999999999985e-43   NR MCA9809068.1 2080303 g13651 i0 79.1 0.334630350194553 86 18 33.5 0 745 488 78 163 MCA9809068.1 pyridoxamine 5'-phosphate oxidase family protein [Candidatus Dadabacteria bacterium] diamond 258 154 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Candidatus Dadabacteria       Candidatus Dadabacteria bacterium
28568799 28568799 PRJNA758087_P_NODE_19547_length_625_cov_5.021739_g18246_i0 PRJNA758087 19547 625 5.021739 31.38586875 Syntrophorhabdaceae bacterium 2660714 Bacteria Bacteria 171 1.22e-47   NR MDD5007769.1 2660714 g18246 i0 64.2 0.5904 123 44 59 0 371 3 280 402 MDD5007769.1 Hsp70 family protein [Syntrophorhabdaceae bacterium] diamond 369 171 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Syntrophorhabdia Syntrophorhabdales Syntrophorhabdaceae   Syntrophorhabdaceae bacterium
31822823 31822823 PRJNA758087_P_NODE_39777_length_275_cov_2.089109_g38457_i0 PRJNA758087 39777 275 2.089109 5.74504975 Thermodesulfobacteriota bacterium 2202153 Bacteria Bacteria 58.9 1.09e-7   NR MEX1000325.1 2202153 g38457 i0 80.6 0.785454545454545 36 7 39.3 0 118 225 1 36 MEX1000325.1 recombinase family protein [Thermodesulfobacteriota bacterium] diamond 216 58.9 1 Bacteria   Pseudomonadati Thermodesulfobacteriota         Thermodesulfobacteriota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;